RNA id: TCONS_00004923


Basic Information

Item Value
RNA id TCONS_00004923
length 1417
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_002649
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 14263684 ~ 14488518 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGCAGTCTTTGTCGATACAGTGAAACACATCGtatacatttatgtatattatgtttccactattattaatatattgggAACATCTTTAATCTGTTGAAATAGTGTTCGGATTATCATCTTTGTTAGCGACGCATACTGCGTTTTTCTTGCGCAGCGTTGTTTACCTCAGGATACTTAGTGAGGGAGAGCAAATGAAAACTTGAAACTCTAAAAAGAAACAATCAACGAATTCCTGTTTAATGTTTCATAACGAGTGAACAAGTAGATTAAGGACAAGCAGGAATAATTTTATTGTACCAGTACGCAGCAAAATGGACATGAACAATAAACCCACGTTTGATCCTAAAGAACACCAGCATTTAAGGTACAATCCTCTGCGGGACTCATGGGTTTTGGTCTCGGCCCATCGGATGAAGCGTCCATGGAAAGGACAGGTGGAGAAACCGCCAGAGGACAACATCCCACGGCATGATCCAAACAACCCTCTGTGTCCTGGCAGTGTGAGAGCTAATGGAGAGCTGAATCCTGAGTATGACAGCACATTCATGTTTGACAATGATTTTCCTGCTCTTCAGCCTGATGCTCCAGACCCCGGTTCGGATCATCACCCTCTTTTCCAGAGCAAAGCAGCCAGAGGCGTTTGTAAGGTCATGTGTTTCCACCCCTGGTCTGACATCACCCTCCCCCTGATGCAGCCTGCAGAGATCCGCAAAGTGATTGACAAGTGGGCAGATCTGACCGTAGAGCTCGGTGCTACATATGCATGGGTTCAGATCTTTGAGAATAAAGGAGCCATGATGGGCTGTTCAAACCCTCATCCTCACTGTCAGGTTTGGGCCAGTAATTTTCTTCCGAACGAGGCATCGTTGGCAGAGCGCTGTCAGAGAGACTTTTTGCAGAAGCACGGAGAGCCAATGCTGGTGCAGTACGCTCGGATGGAGGCACAAGCACAGGTAATACACCCACATAAGACACACTTCATAGCGTTCAGGAGTCTGTCAGCAGAAAAACTCCCTATGGATAGTTTGTAAAGACTCTCACAAACACAATGTAAGAGTGCTTTGACAGCCCTGCTGAGAGGGAAAAATTCTTAAACTGGTTTGAGATGCTGTGTTGGTCACTGAGCTGGTTgagtttgatggttttaaaagggaattttcagttttgaggaAAAGTTTGAAATATTCTTATCACGTATTTGTGAAACTTCACCTTATCAAATGAGGATGATGTGAAGATCTTTACACCATAAAACAATCTgttaacaaatgattaaaatttcATCACTATGCGAAAACGTCATGCAGTACAACCATCAAGTAAAACACATTTCATCATTTTTGGAATACATGTCAGTCCACAAGTCTTTTATAAGAGTAACaattttacatacagtatacaatatatgtcaaagc

Function

GO:

id name namespace
GO:0033499 galactose catabolic process via UDP-galactose biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0006012 galactose metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0008108 UDP-glucose molecular_function
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko00052 Galactose metabolism
ko00520 Amino sugar and nucleotide sugar metabolism
ko04917 Prolactin signaling pathway

ZFIN:

id description
ZDB-GENE-070112-172 Enables UDP-glucose:hexose-1-phosphate uridylyltransferase activity. Acts upstream of or within galactose catabolic process via UDP-galactose. Predicted to be active in cytoplasm. Used to study galactosemia. Human ortholog(s) of this gene implicated in classic galactosemia. Orthologous to human GALT (galactose-1-phosphate uridylyltransferase).

Ensembl:

ensembl_id ENSDART00000101298

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006012 lncRNA downstream 1118991 13298839 ~ 13301973 (-) True XLOC_002642
TCONS_00006011 lncRNA downstream 2522389 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00004895 lncRNA downstream 3087851 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00006010 lncRNA downstream 3633315 10784334 ~ 10787649 (-) True XLOC_002626
TCONS_00006009 lncRNA downstream 3706737 10712178 ~ 10714227 (-) True XLOC_002625
TCONS_00006013 lncRNA upstream 542534 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA upstream 544500 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00004942 lncRNA upstream 593938 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00004943 lncRNA upstream 593938 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00005751 lncRNA upstream 595122 15083594 ~ 15083896 (-) True XLOC_002660
TCONS_00004917 mRNA downstream 648103 13475830 ~ 13772861 (-) True XLOC_002645
TCONS_00004916 mRNA downstream 648117 13460130 ~ 13772847 (-) False XLOC_002645
TCONS_00004915 mRNA downstream 1024244 13305627 ~ 13396720 (-) True XLOC_002644
TCONS_00004914 mRNA downstream 1077133 13305610 ~ 13343831 (-) False XLOC_002644
TCONS_00004912 mRNA downstream 1181597 13236100 ~ 13239367 (-) True XLOC_002641
TCONS_00004924 mRNA upstream 36712 14525184 ~ 14536399 (-) False XLOC_002650
TCONS_00004925 mRNA upstream 41335 14529807 ~ 14540443 (-) True XLOC_002650
TCONS_00004926 mRNA upstream 54254 14542726 ~ 14545658 (-) True XLOC_002651
TCONS_00004927 mRNA upstream 59469 14547941 ~ 14556978 (-) True XLOC_002652
TCONS_00004930 mRNA upstream 382664 14871136 ~ 14929659 (-) False XLOC_002654
TCONS_00004920 other downstream 489268 13931569 ~ 13931696 (-) True XLOC_002648
TCONS_00004919 other downstream 808716 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004918 other downstream 813821 13607027 ~ 13607143 (-) True XLOC_002646
TCONS_00004913 other downstream 1115781 13305065 ~ 13305183 (-) True XLOC_002643
TCONS_00004903 other downstream 2656525 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004928 other upstream 243811 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004937 other upstream 449355 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004948 other upstream 848838 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004954 other upstream 1129744 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004975 other upstream 2588961 17077433 ~ 17083377 (-) False XLOC_002675

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_03960519_03974458.mRNA True 879 mRNA 0.48 8 CI01000304 3960324 ~ 3974458 (-)