RNA id: TU2080941


Basic Information

Item Value
RNA id TU2080941
length 519
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G1818647
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 49517451 ~ 49518194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACAGTAGAGCAGACTACAGTAGAGCAGACTACCGTAGAGCAGACTACAGTAGAGCAGACTACCGTAGAGCATACTACCGTAGAGCAGACTACCGTAGAGCAGACTACAGTAGAGCAGACTACAGTAGAGCAGACTACCGTAGAGCAGACTACAGTAGAGCAGACTACTGTAGAGCAGACTACAGTAGAGCAGACTACCGTAGAGCAGACTACAGTAGAGCAGGCTACAGAAGAGCAGACCTCTGTAGAACAGGCTACTGTTGAGCAGGCTACTGTAGAACAGGCTACTGTAGAACATACTTCTGTAGGGCAGACCTCTACAGAACAGGCTACAGAATAGCAGACTACAGTAGAGCAGGCTACAGTAGAGCAGACTACTGTGGAGCAGGCTACAGTAGAGCAGACTACAGTAGAGCAGGCTACAGTAGAGCAGACTACAGTAGAGCAggctacagtatagcagactacagTAGAGCAGGCTACAGTAGAGAAGACTACCGTAGAGCAGAATACAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2080934 lncRNA downstream 10891 49505892 ~ 49506560 (-) True G1818640
TU2080840 lncRNA downstream 109027 49408184 ~ 49408424 (-) True G1818559
TU2080835 lncRNA downstream 112331 49404598 ~ 49405120 (-) False G1818555
TU2080836 lncRNA downstream 112331 49404598 ~ 49405120 (-) True G1818555
TU2080830 lncRNA downstream 117085 49399957 ~ 49400366 (-) True G1818550
TU2080976 lncRNA upstream 40970 49559164 ~ 49559382 (-) True G1818677
TU2080987 lncRNA upstream 47476 49565670 ~ 49566439 (-) True G1818685
TU2081015 lncRNA upstream 86519 49604713 ~ 49605292 (-) True G1818710
TU2081020 lncRNA upstream 91803 49609997 ~ 49610209 (-) True G1818715
TU2081030 lncRNA upstream 99517 49617711 ~ 49621767 (-) True G1818723
XM_036959089.1 mRNA downstream 36491 49470102 ~ 49480960 (-) True LOC118943599
XM_036959601.1 mRNA downstream 552818 48962212 ~ 48964633 (-) True LOC118943644
XM_021580043.2 mRNA downstream 871530 48505445 ~ 48645921 (-) False LOC110502188
XM_036959468.1 mRNA downstream 1297409 48139761 ~ 48220042 (-) False LOC110501956
XR_005038852.1 mRNA upstream 604694 50122888 ~ 50243942 (-) False prkag3b
XM_036959479.1 mRNA upstream 604694 50122888 ~ 50243944 (-) False prkag3b
XM_036959480.1 mRNA upstream 604694 50122888 ~ 50243944 (-) False prkag3b
XM_036959481.1 mRNA upstream 604694 50122888 ~ 50243945 (-) True prkag3b
XR_005038856.1 mRNA upstream 941900 50460094 ~ 50465680 (-) False si:ch211-67e16.4
TU2080662 other downstream 351084 49165751 ~ 49166367 (-) True G1818417
TU2080631 other downstream 391334 49125514 ~ 49126117 (-) True G1818393
TU2080196 other downstream 889605 48627364 ~ 48627846 (-) True G1818059
TU2080079 other downstream 1047416 48469598 ~ 48470035 (-) True G1817968
TU2079931 other downstream 1057411 48459026 ~ 48460040 (-) True G1817836
TU2081122 other upstream 199438 49717632 ~ 49719378 (-) True G1818802
TU2081603 other upstream 691280 50209474 ~ 50213886 (-) True G1819189
TU2081760 other upstream 783607 50301801 ~ 50305038 (-) True G1819250
TU2082589 other upstream 944691 50462885 ~ 50463762 (-) True si:ch211-67e16.4
TU2082615 other upstream 976990 50495184 ~ 50496991 (-) False cd28

Expression Profile