Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00051940 |
| length | 842 |
| lncRNA type | retained_intron |
| GC content | 0.54 |
| exon number | 3 |
| gene id | XLOC_026667 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 40526107 ~ 40529804 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005884 | actin filament | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0097433 | dense body | cellular_component |
| GO:0005925 | focal adhesion | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0098973 | structural constituent of postsynaptic actin cytoskeleton | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-000329-3 | Predicted to be a structural constituent of postsynaptic actin cytoskeleton. Predicted to be located in several cellular components, including cytoskeleton; dense body; and focal adhesion. Predicted to be active in actin filament. Is expressed in several structures, including blastomere; brain; eye; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Baraitser-Winter syndrome and autosomal dominant nonsyndromic deafness 20. Orthologous to several human genes including ACTB (actin beta). |
| ensembl_id | ENSDART00000132497 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00051934 | lncRNA | downstream | 121899 | 40396063 ~ 40405386 (-) | False | XLOC_026666 |
| TCONS_00053082 | lncRNA | downstream | 122036 | 40396063 ~ 40405249 (-) | False | XLOC_026666 |
| TCONS_00053083 | lncRNA | downstream | 122251 | 40403056 ~ 40405034 (-) | True | XLOC_026666 |
| TCONS_00051928 | lncRNA | downstream | 275340 | 40251416 ~ 40251945 (-) | True | XLOC_026662 |
| TCONS_00053081 | lncRNA | downstream | 345631 | 40180136 ~ 40181654 (-) | True | XLOC_026659 |
| TCONS_00053084 | lncRNA | upstream | 244643 | 40774418 ~ 40777723 (-) | True | XLOC_026671 |
| TCONS_00051957 | lncRNA | upstream | 429803 | 40959578 ~ 40962832 (-) | True | XLOC_026677 |
| TCONS_00051965 | lncRNA | upstream | 866348 | 41396123 ~ 41512210 (-) | False | XLOC_026681 |
| TCONS_00051966 | lncRNA | upstream | 915419 | 41445194 ~ 41512210 (-) | True | XLOC_026681 |
| TCONS_00051968 | lncRNA | upstream | 1001507 | 41531282 ~ 41535761 (-) | True | XLOC_026682 |
| TCONS_00051933 | mRNA | downstream | 225818 | 40296785 ~ 40301467 (-) | True | XLOC_026665 |
| TCONS_00051932 | mRNA | downstream | 242541 | 40277704 ~ 40284744 (-) | True | XLOC_026664 |
| TCONS_00051929 | mRNA | downstream | 251214 | 40260929 ~ 40276071 (-) | False | XLOC_026663 |
| TCONS_00051943 | mRNA | upstream | 70995 | 40600770 ~ 40664913 (-) | False | XLOC_026668 |
| TCONS_00051944 | mRNA | upstream | 75344 | 40605119 ~ 40664868 (-) | False | XLOC_026668 |
| TCONS_00051945 | mRNA | upstream | 75613 | 40605388 ~ 40658820 (-) | True | XLOC_026668 |
| TCONS_00051946 | mRNA | upstream | 150156 | 40679931 ~ 40681001 (-) | True | XLOC_026669 |
| TCONS_00051947 | mRNA | upstream | 160437 | 40690212 ~ 40768548 (-) | True | XLOC_026670 |
| TCONS_00051924 | other | downstream | 368598 | 40154294 ~ 40158687 (-) | True | XLOC_026658 |
| TCONS_00051921 | other | downstream | 438484 | 40088685 ~ 40088801 (-) | True | XLOC_026657 |
| TCONS_00051914 | other | downstream | 569811 | 39957358 ~ 39957474 (-) | True | XLOC_026654 |
| TCONS_00051909 | other | downstream | 877723 | 39649445 ~ 39649562 (-) | True | XLOC_026651 |
| TCONS_00051900 | other | downstream | 1267608 | 39238096 ~ 39259677 (-) | False | XLOC_026643 |
| TCONS_00051964 | other | upstream | 782247 | 41312022 ~ 41312143 (-) | True | XLOC_026680 |
| TCONS_00051981 | other | upstream | 2336308 | 42866083 ~ 42866200 (-) | True | XLOC_026691 |
| TCONS_00052007 | other | upstream | 3551848 | 44081623 ~ 44094226 (-) | False | XLOC_026707 |
| TCONS_00052055 | other | upstream | 6665362 | 47195137 ~ 47195234 (-) | True | XLOC_026732 |
| TCONS_00052070 | other | upstream | 8547987 | 49077762 ~ 49077879 (-) | True | XLOC_026748 |
