RNA id: TCONS_00052170


Basic Information

Item Value
RNA id TCONS_00052170
length 3750
RNA type mRNA
GC content 0.48
exon number 12
gene id XLOC_026828
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55487261 ~ 55537096 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acccgaggctcgaaccagtgtccttcttgctgtgaggcgaacaggctacccactgcgccacctataataatataatataatataatataatataatataatataatataatataatataatataatataatataatataatataatataatataatataatataatataataaatataatataatcagcAGGGGGCGCTTCTATCCTGCAAATTCGTCCAACTCACCAAAACAAACACACGCCCTTGCAGCAGGCATTTTAATCCAGCACAGAGTGAGTGGACGTAGACGTGTGTCATCAGCTACAGCGGATCATTGTTTGATTGGTGTAGTCTGGGGAGTCCGAATAGGTTATTTTCGCTCCGCTTCCCTGATGTGCTCCTGTCACTGGATTATAAACACAGACATGACAACATCTACAGTCCAGATCGATTGTGGACGGGCATCCGAATATGTAACACATTGGATACCCCTCTGGTCGTAATTTTGGCTGGATAATGAAGATATGTAATGGCTGTGAGCTGTTTTGAATGGTGCCATGACCAGTAAGGGTGGTAGCCATGAAGACACGCTAAGCCCTCCGTCTTCCTCCTCTTCTCGGTCCTCAGCAGCCCGTAAGGTGCAGGTGCAGAGGTCGCTCTCCCGAGATACCATTACCATACATTTTTCTGCCAAGGGcaatgaggaagaggaggaggaagaggagctcTACAGGCTAGCTGTTTCCCCTTCTGGCCTTGAAACTGAAGATCAGAGCATAGTCACAGCTCAGGAAGCCAGCGAGGAGCTTCTTTCTGAAGGACTGGGAGCAGACATGGTTACAGGAATGTCATGCCAAACTCAAAGTTCTGCCTTAGCTATCCAGCACCCCTCTGTTAGCCTGGGCTGCACGGCTACTTCTAATCTTGCTAGTTTCTCATGGCCCTCTGAGCAAAGGTCAACTCCCCCATTACCTTCCACCCATTCAGCTTCCTCCAGCTCATCACCAGCTAAGGCCCTACCTTCTAAGCCCTTTCTCAGCCTAGTCAAGTCACTTTCCTCTGAGGTAGAGTCTAGAGAGGCTCCCACTGTTGCTCCCCAGTCGGTAAGGCACCGCCATTTGATGAAGACTCTAGTTAAATCTTTGTCTACAGACACTGCTCGACCTGAGCAGGAGCCTTCGTCAACTCCTCGACCCCCAGATTCGAGGCTCAATCTGCATCTTTTTAAACCTTTCACCCAAACACGTGTTCCTGGTGGCAGTGGAGACTCCAAAACTGCTCCCTCATCCCCCCTCACTTCCCCCGATAGCCGTTCTTTCTTTAAAGTCCAGGAAGTGGAAGCACGCATTGAAGACACAAAGCGCCGTCTCTCAGAGGTCATGTGTGAACCCCTTCAGCTGCTCAGCAAAATCATTGGCGAGGAACCCGGTGGTGTGAGCGCAAACTCTTCCTCATCTACGGCTGCAGGAGTGTCTTACCGGTCCAGAAACCTTTCCTCCAGCGCCTCTGAACTCTCTAACCTGTCTGCCCTCAATGGCCACTCAGAAAGCAACAATAACTACTGCATCAAGGAGGAGGAAGATCTGGAGAATGAAAGCCCTGTCGAGAGTGCAACTGTTGAGTTGCCTCTCCATAGGTCACCCTCGCTAGGATTGGACCGGTGTTTTATGTCAACGCTCGCTCGCCAGGAAGATGAAGAGTTCTGTGAGCTTTACACCGAAGACTTTGAGTTCTGCACTGATATGGAGTTAGATGGAGAAGAGACTCATATATCCCTAGTACAAAGAGGGAGTACAGCAGGATGCAGTGAGGAACCGACTGAAGGaggggaggaggaggaagaggaagatgaGCCTCCGGGAGTACCTCACAATGGACTGATTCTTCTTATATCTATAGTTTATGGATACTTTGTGTTGCCACTGCCTTCCTATGTGTGTTGGGTGTTGATGGGGGTGGCGGCGGGTTTCATGCTGGCAATTCTAGTGGTGTGGTTGTCGGCAAGACAGAAAACATCTTGGGGCCGTCATGGCAGCTTGAGTAGAAGACATCAATGGAACAGGGTTCCTTTGGATATCAAAGAACCAGCCATCTACAAGGGTTGGATGAATGAGATCTGCAGTTATGACCCTGAGACATATCACGCCACACTCACTCACTCTGTGTATGTGCGTCTGGAGGGCTCTGTCCTGCGACTGTCCAAACCTAACCGCAATATCCCCCGTCGGGCAACCTTCAGTGAACTCAAACCTGATGTCACCTATGTTAGCCAAAAAATTTATGATCTCACCAACAGTAAGGTCTACCTGGTACCTAACAACCTGGCCAGGAAAAGGGTGTGGAATAAGAAGTATCCCATCTGCATTGAGCTGGCCAAGCAGGATGATTTCCTTGCCAAAGCCCAGGGAGAAAAAACAGAGGTGATGGAGGAGAAGACCCTTACAGCCGGAGACAAGGCTGAGATAGTAAGCACTAGTGAGGAACCTAAGAGACTGCACACAGAACCTGTGCTGTACCTCTTTGGGAGGACAGGACGAGATAAAGAAGAATGGTTCAGAAGGATGCTGTTTGCATCTAAACTGAAATCCGAAGCCAAGAAGCCCTCAGGCCTGCCTACAAGCTGTCTGTCTCACAGTCGCAGCAGCAGCCGTGGCAGTCTGGATGAAGTGCTCCAGTCTCATCCCAAACAAAAAGACCTCGGTGCCAGTGTCAAACAGAAAGTTCTGGAATACAACGTCTATATGGCCAAATATGTCAGCCAATCAGTTGGAAGCCCTACCACGAGCCCTGTTCAGAGTGCTGGAAGCAGTCCTGGAACCACTAAAAAGTTTCCAGAAAGTTGTGAACAGAGCGCTGAAACAGAGGCGTGGATCAATGCTCTTTTGGGTCGCATGTTCTGGGATTTTCTTAGGGAGAAATACTGGGCAGATGTGGTATCCAAAAAGATCCAGAAAAAGCTGAGTAAGATTAGGCTGCCATACTTCATGAATGAGCTGACTCTGACTGAGTTAGACATGGGAATATCCATTCCCAAGATCCTCAGCTCTTCTAAACCTTCTGTAGATCACAAAGGCCTTTGGTTTGACTTGGAGATATCCTACAATGGTTCCTTTCTCATGACTCTTGAAACCAAAATGAACCTGACCAGATTGGGAAAGGAGGGAGAAGGCCTTGGGGAACAGGGGAAAGAAGGATCCAGACCCCGCACTTACTTCCTGGCCGACAGTGATGAAGAGTCATCAAGTGCAGGATCTTCTGATGAAGAAGATACTGTTGAAGTGCCTGAAATCCCAGGGGTGGAGGGTTTTGTTGGGGGACACAAACCAAGCAAAATCATGCGCTTTGTGGACAAGATTGCCAAATCCAAGTATTTCCAGAAAGCCACAGAGACTGAgttcattaaaaagaaaatcGAAGAAGTGTCCAATACTCCGCTGCTCCTGACGGTGGAGGTCCAGGAGTGCCAAGGAACACTTGCCGTTAACATTCCCCCACCTCCAACAGACAGAATATGGTATGGTTTCAGAAGGCCTCCTCGTCTGGAACTGAAAGCTCGGCCAAAACTGGGAGAAAGGGAGGTTACTTTTGCCCATGTGACAGACTGGATAGAAAAAAAACTAGATCAGGAATTTCAGAAAATATTTGTGATGCCAAACATGGATGATGTCTGGCTGCCTATCATGCACTCTGCCATGGACACACGTTCCAATGCCAGTGCCTTGAGGGACGAAGAAACCTTGGATCCTAAAGAATCTCTCGAGGACATGTGA

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070615-7 Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human TEX2 (testis expressed 2).

Ensembl:

ensembl_id ENSDART00000188752

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052162 lncRNA downstream 159718 55314588 ~ 55328513 (-) True XLOC_026825
TCONS_00052151 lncRNA downstream 383974 55103445 ~ 55104257 (-) False XLOC_026819
TCONS_00052153 lncRNA downstream 384143 55103447 ~ 55104088 (-) True XLOC_026819
TCONS_00053145 lncRNA downstream 604051 54873401 ~ 54884180 (-) True XLOC_026814
TCONS_00053144 lncRNA downstream 667331 54791553 ~ 54820900 (-) True XLOC_026812
TCONS_00053146 lncRNA upstream 301358 55838454 ~ 55839514 (-) True XLOC_026831
TCONS_00052184 lncRNA upstream 874045 56411141 ~ 56413023 (-) True XLOC_026834
TCONS_00052190 lncRNA upstream 1064829 56601925 ~ 56614135 (-) True XLOC_026836
TCONS_00053147 lncRNA upstream 1499998 57037094 ~ 57037670 (-) True XLOC_026840
TCONS_00052211 lncRNA upstream 2520518 58057614 ~ 58059819 (-) True XLOC_026851
TCONS_00052164 mRNA downstream 8899 55420176 ~ 55479332 (-) False XLOC_026827
TCONS_00052165 mRNA downstream 9584 55424635 ~ 55478647 (-) False XLOC_026827
TCONS_00052163 mRNA downstream 83246 55401951 ~ 55404985 (-) True XLOC_026826
TCONS_00052161 mRNA downstream 159683 55218597 ~ 55328548 (-) False XLOC_026825
TCONS_00052159 mRNA downstream 274101 55161627 ~ 55214130 (-) False XLOC_026824
TCONS_00052172 mRNA upstream 90852 55627948 ~ 55649319 (-) False XLOC_026829
TCONS_00052173 mRNA upstream 94032 55631128 ~ 55650771 (-) False XLOC_026829
TCONS_00052175 mRNA upstream 107119 55644215 ~ 55650417 (-) True XLOC_026829
TCONS_00052177 mRNA upstream 147353 55684449 ~ 56030117 (-) False XLOC_026830
TCONS_00052176 mRNA upstream 147353 55684449 ~ 56030117 (-) True XLOC_026830
TCONS_00052166 other downstream 7074 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052148 other downstream 408987 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052136 other downstream 1798803 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052111 other downstream 3580669 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 3939981 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052174 other upstream 107113 55644209 ~ 55650417 (-) False XLOC_026829
TCONS_00052186 other upstream 943716 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052189 other upstream 1064804 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052254 other upstream 4914404 60451500 ~ 60451628 (-) True XLOC_026892

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000112_03861399_03879738.mRNA True 3230 mRNA 0.51 11 CI01000112 3861399 ~ 3879752 (+)