RNA id: TCONS_00052173


Basic Information

Item Value
RNA id TCONS_00052173
length 3515
RNA type mRNA
GC content 0.49
exon number 11
gene id XLOC_026829
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 55627948 ~ 55650771 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCGCTCTTTGATGTCCGCTCTTAAACCCTGAGCTCAGTCCACACTGGAATAAGAGACCAGAGCACATTCAACACACTATACAGGGATCCAGTGTGTTCTTTACGGGAGGAAGAGTACGTTTAAAAGCTCCAATCTGCGTTTGACACTAAACAACACCAGAGAACAGAAGGACGTGCAAAATTGGATATATTGTGGATTATTTTTTTGTTCGGTTGGAAGATCGGGACTTTACGGACTGAACTCATGGATGGATGAGAGAAGCTCCCCTGCTGATTTAAGAGAGAGAGGAGATTACAGCTGAGCTTCACACTGAAGGCTTTGCTGCTGGAGCTGCAAGAGCCATGAATAGGACACTAACAGATCCTATGGTCAGTAGCTTCAGAGAAGATGACCCACGTCCACCGGTCCCAGGGGAAGAGGGTGAGACGACATGCCACCATCCCAGCAAACTGGCCATGATGAGACCGAAGGATCCTGTCAAGACCATTATGGCTGATCTTCGTTGTTCCACGGCCAGGAGGGATGAGGATGGACTTGGGGAACCTGAGGGCAGCGCATCCCCGGACTCCCCTCTTGCCCGGTGGACCAAATCTTTGCATTTTCTTCTCGGGGACCAGGATGGTGCTCAACTTTTCCGGGCATACCTTGAACGCGAGAAATGTGTGGACACTTTAGATTTTTGGTTTGCCTGCAATGGTTTCAGACAAATGGACCTCAAGGATACCAAAACGCACAGAGTTGCCAAAGCCATTTACAAGCGGTATATTGAGAACAACAGCATTGTGGCCAAGCAGCTTAAACCTGCCACTAAGACCTTTATTAGGGATAATATTAAGCGTCAGCAGATTGACTCTGCAATGTTTGATCAGGCTCAAATGGAGATCCAGACGGCTATGGAGGAGAATGCCTATCAGATGTTTTTGACCTCGGACATATACCTCGAGTATGTCAGAACTGGGTGCGAGAACCCCAGTCATGTGAATCCCAATGGTCTAGGAGGTCTAAAGCTGGTGTGCGGATACTTGCCAACTTTAAATGAAGAAGAAGAGTGGAGTTGTAATGACTTTAAAGCCAAAGCTTTGGCCACTGTAGTGGGTCTGTCTGCCAAAACACTACGGTCACCACCTCTTCGTGCTGTGGAAGCACTGGAGAAAGGCTACAGGTCCTACAGACGCAGTGACCCCGGAAATCCTAATCGTTTTACGTCCGGTTATAGTTTTGCCCCTGCCACGAGTGCCAATGACAGTGAAGTTTCTAGTGATGCACTGACGGATGACTCCATGTCAATGACAGACagtagtgtAGATGCCATTCCTCCTTACAAGCTGGGAagtaaaaaacaattacaacGAGAGATGCAGCGCAACATGAGGATGAACGGCCAAGTGTCTCTGCCTCCGTTCCCTAGGACGCGGCGGCCACCTAAGGAGATGACTCCCGTGGAGCCAGCAGCCTTTGCAGCACAGTTGATAGCCAGACTGGAGCGACTGAAGCGGGAACAGGAAACCATGAGCTCCCTGGAGGAGAGACTTCAACAGATTCAGGAGGAGGAAGAGCGAGATGAATCTGAGATGTCTAGTAGCAGTGCGTCCCATTCTCTGCCTTTGCTCCCTCCTGGCACTTGTGAGGAGGATCCTCAGGCCATCCTGGACGAGCACCTTTCCAGAGTCCTCAAGACCCCTGGCTGTCAGTCTCCAGGATTGCTTCGACATTCCCCACGCTCTCGCTCTCCTGAACAGCGTCCCCTGCCTCGGGGAGGTCTCAGCACAAGGTCACAGTCTAGCTCTATGAATGGATATGTGCCAGCCAAGACCttcatttctagacagtcaacCAAGCACATCCATCACCACTACATCCATCACCATGCTGGGCCTAAAAGCAAGGAGCAGATTGAGGTGGAGGCGACACAGCGGGTACAGTGCCTGTGCCATGGAACCTCAGAATGCTGCACTGCTCCTTACATTCGCAGCCGGAGTCTGGGCAGAGACCAGTGTGCCAGCCCTGCAGAAGTGGCCTTGGGgCATTCCAGTACTTTATCCAAGCGTCTGTGTAAATCTGGAGAGGAGGTGAACATGGAAGGGCTGGAGAACAGTCTCCTCCAGCTGCCAGCTGACAGTACAGATCGCTCTCAAAATGTATGGCAATGGATCCTGGAGAGCGACCGACAAACCAAGCACAAGCCCCACAGCACTCAAAATGTAAAGAAGTCGCACAGTTTGGAACCAACGCGCACGCACACCTGGGGAGGTGGCGGAAGCAGTGGGCATCTCCGTGCCCACCAGCCCGCACACCCCTTTGTTCAGGACCCCGCCATGCCACCTCTACCCCCTCCCAACACCTTAGCACAGCTTGAAGAAGCCCGCAGACGCCTGGAGGAAGTTTCCAAACCCTCAAAACAAAGGCATTCAACATCAAGCCTTCAGAGAGACAAGAGTCACCCAGTGCCTGTTCAGAATGGCAGTTCAGCATTTCCAATGGACGAAAGGAAAGATCCTAAGAAGATGTCAGGCTGTCACAGTAGTTTGGGCTCGGAGACGGTAGTCACGTACTTCTTTTGTGGTGAGGAAATCCCATATCGGCGGATGATGAAAACACACAGCCTTACCCTCGGACACTTCAAGGAACAACTACGGAAAAAAGGCAACTACAGATACTTCTTCAAAAGGGCCAGTGATGAGTTTGAGTGTGGTGCTGTGTTCGAGGAGGTCTGGGATGACTGCACAGTTCTGCCAATGTATGAGGGCAAAATCCTCGGCAAAGTGGACAGAATGGACTAAAAGGACACGTGGAATTACCCAGCACTCGAAACTAACTCAAGGAGCTAGAGCTTCATAACTCAAAACGGATGTCCAATGAAGACGTTTGGCTTACAAGCTATTGAAGGAATACTGGCCAATGAAGTACAGAGGGATCTGAACCAGCGGGAAAACTACGACGAGAGATGTTCTAACCAATGAAGACTCGGTCAACTATTCGCTTATTCGGACTACAATTCGCCAACTTTGCTGTGTTACCAGAACGTGGACTGCTGACCAGCATTCGTGATGATAATTGTAGATGTGTGTACATGTGTTGGATGCAAGAACGTGTGCATGTGTATACAGAGGTGCTCCTATGTACACAGTTATAATATGCTTCTATCACAAGTTAAAgactttattactatttattaaacTGTCATTCCCCTCATACCTGTGTTCAGATGATGGACAAGCTGCTTATTTTATTGGGAGATTTTTTTCCAATGTCGACTCAACAGACTGTACCAGGAACCTTCTCTTCTGACCAATGAGAACAAACTGTGCTTTAGACCAGCACGCCTCTGCAAGCCTCTCAGCTGATATGGTGGATATTTCAACCTTTATCCCCCAGCCAATAGCCGATGATGTGTTGCATCTTTAGTGCCTTTGGTTTAAGGTCCAGACATTGCACAGGAACCAGTAGCCTTGTCCTGGAGCCTACTCCAAAACTATTTAAATGAACAATAGTAATAAAAAGACAcactatttaa

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:2000054 negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko04310 Wnt signaling pathway
ko04390 Hippo signaling pathway
ko04550 Signaling pathways regulating pluripotency of stem cells
ko05200 Pathways in cancer
ko05210 Colorectal cancer
ko05225 Hepatocellular carcinoma
ko05226 Gastric cancer
ko05217 Basal cell carcinoma
ko05213 Endometrial cancer
ko05224 Breast cancer
ko05165 Human papillomavirus infection
ko05010 Alzheimer disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko04934 Cushing syndrome
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-000403-2 Involved in negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification. Acts upstream of or within dorsal/ventral axis specification and heart development. Predicted to be located in cytoplasm. Is expressed in several structures, including anterior neural keel; marginal blastomere; nervous system; pharyngeal arch; and pleuroperitoneal region. Used to study congenital heart disease. Human ortholog(s) of this gene implicated in colorectal cancer and endometrial adenocarcinoma. Orthologous to human AXIN2 (axin 2).

Ensembl:

ensembl_id ENSDART00000162413

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052162 lncRNA downstream 302615 55314588 ~ 55328513 (-) True XLOC_026825
TCONS_00052151 lncRNA downstream 526871 55103445 ~ 55104257 (-) False XLOC_026819
TCONS_00052153 lncRNA downstream 527040 55103447 ~ 55104088 (-) True XLOC_026819
TCONS_00053145 lncRNA downstream 746948 54873401 ~ 54884180 (-) True XLOC_026814
TCONS_00053144 lncRNA downstream 810228 54791553 ~ 54820900 (-) True XLOC_026812
TCONS_00053146 lncRNA upstream 187683 55838454 ~ 55839514 (-) True XLOC_026831
TCONS_00052184 lncRNA upstream 760370 56411141 ~ 56413023 (-) True XLOC_026834
TCONS_00052190 lncRNA upstream 951154 56601925 ~ 56614135 (-) True XLOC_026836
TCONS_00053147 lncRNA upstream 1386323 57037094 ~ 57037670 (-) True XLOC_026840
TCONS_00052211 lncRNA upstream 2406843 58057614 ~ 58059819 (-) True XLOC_026851
TCONS_00052170 mRNA downstream 94032 55488231 ~ 55537096 (-) False XLOC_026828
TCONS_00052169 mRNA downstream 94032 55488231 ~ 55537096 (-) False XLOC_026828
TCONS_00052171 mRNA downstream 99678 55509024 ~ 55531450 (-) True XLOC_026828
TCONS_00052168 mRNA downstream 105501 55488231 ~ 55525627 (-) False XLOC_026828
TCONS_00052167 mRNA downstream 119559 55487261 ~ 55511569 (-) False XLOC_026828
TCONS_00052177 mRNA upstream 33678 55684449 ~ 56030117 (-) False XLOC_026830
TCONS_00052176 mRNA upstream 33678 55684449 ~ 56030117 (-) True XLOC_026830
TCONS_00052178 mRNA upstream 703873 56354644 ~ 56355966 (-) True XLOC_026832
TCONS_00052179 mRNA upstream 758069 56408840 ~ 56456527 (-) False XLOC_026833
TCONS_00052181 mRNA upstream 758846 56409617 ~ 56512473 (-) False XLOC_026833
TCONS_00052166 other downstream 149971 55456353 ~ 55481157 (-) True XLOC_026827
TCONS_00052148 other downstream 551884 55063267 ~ 55079244 (-) True XLOC_026816
TCONS_00052136 other downstream 1941700 53689310 ~ 53689428 (-) True XLOC_026804
TCONS_00052111 other downstream 3723566 51907486 ~ 51907562 (-) True XLOC_026783
TCONS_00052109 other downstream 4082878 51548133 ~ 51548250 (-) True XLOC_026779
TCONS_00052186 other upstream 830041 56480812 ~ 56574965 (-) True XLOC_026833
TCONS_00052189 other upstream 951129 56601900 ~ 56617041 (-) False XLOC_026836
TCONS_00052254 other upstream 4800729 60451500 ~ 60451628 (-) True XLOC_026892

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU375455 False 1741 TUCP 0.54 5 CI01000112 3759799 ~ 3768605 (-)