RNA id: TU2173935


Basic Information

Item Value
RNA id TU2173935
length 2016
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G1900715
representative True

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 9468967 ~ 9471097 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATAGTATGAAACAGTATGGTGTTTATTGAGCTGTTTCGAAGCACACAGCTATCTTGAACAAGCAGCAACACAAGAATATTCACACTTGATGTTCATAGTACAGTCGAGATTGTGCAAGCCTAGGGTTGTGCACACAGGCCCTGAACACAGTTCAAAACTGAATGTATGCAATAGTGTGTTAGTGTCTGCGCTTGTAGGTGCTTGAGCGCATgtggtggtggttagagagaGTAAGAGTCTGCCATGTCGCTGCAGAGGAAGTGCATCAGTTTGGCATTCACTTGGTACGTATGGTGCGTGAGTCAGTGTGagtgagaagggagggagagagggaggggtccgGTTGAGGGCGTGTTTATGCCTTCATGGCCTGGCTGATGGTCTCGTACAAAGCCATGAGCTTTTCCTTGGCCTGCTCGGCGGCGGGGCCCAACTGGCCCTTGAAGTCGGTGGTCAGGGGCACCACCTTCTCGCGCACCTCTCCAACAGCCTTGACCATCTGCTCCTTGTACTCCTCAGCGTAGGGGGAGGCCAGGGTCCTCAGCTCCTCCAGACGCTCGGTCAGCTTGGCACGGACGGTCTCCACGATGGGCATGAGCTTGGCCTTGGTCTCCTCCACGTTGGCGGACACCTTGGCACGCATCTCCTCCACAACGGGCTCTATCTTAACCCTGAAGGCCTCCAGCTCGGTGCGGCGCTGCTCGACGATGTCCTTGATCAGGGGCTCCAGCCTCTTGCGGTACTCGTCTATGTGCTTGTCCAGGACTTCCTTGAGCTCGGCTCGCTTGGGCTCCAGCTGGGAGCGCAGCTCCTCCACGTCCTTCATGACCTCAGCGCGCACGGCGGCGGTGGCTTCAGTCAACTGAACGCCGATGGCCTCGCTGTAGGGGGCCAGGGACTCGGAGGCGGTCTGGGCATACTGCTGGAGGTTGTCAAGGCTCTGGGACAGCTGCCTTGTACTCTTTGTACTCTGTGTCATCCAGATGGTCGATGGACCTCTGTGCAGTCTCCTTCACCTGAGCCATGTACTCCATCATGGCTACCTTCACATGCTCCAGCTGAGAGGGAGCATCAGCCTGCATGGGTACAGCCTGGGtagctgggagaggagagagaggggagagggtcaGACATTGGTTGGGCAACAGTGGTGAATGGCCCAGCACTTTAATGGAATTGAGTAAGATTCAATTTAGAATTTTTCAATATACCAGAGCATGGGATACTAACCTGCGGCCAGCAGGATGGTGAGTGCAAGAGCCAGGAATTGCATGATGGTGGTCTGAGGGGGGAAAAGAGAACAGATGATGAACAATGAGCAAGACAAGAATTCAAATAGTCACAATTAAACATGTAAACCATGGGAAGTCAACATTGAATGGTTAAGAATAGATTTAGAGTTGAACAATACTTGAACAGTGTAACAAATCACTAATTGCAAAACACTctaaatcaaactttaaatgtcACCAAAAGCAAACTAGACAATAATTAACTTGGAGAAGCACAAGGAGCAAACCCCCAAAGGCACGCAACTCCAGGCTGCCCTAAATCAGTTGACGCTTTGCCATATGTCAGCCTATTGAAAGGACCTCTAATCTGGTCAGATTACACAGAGCTGGATAGAGTTATACTGTTCCTTCAACGAGATTAACCCTTAACTCCTTCCACCTAATTCCCATAGGAAGAAAATTAGCTTATCTTTTTTTCTAGGACATTTAATACAATTATTTCTCCATTGTTCCCTTGCATCTCTCTAGTAAATTATCGTAAACTGTCTGGAAGAAGTATTGCTAAAGTGATAACTGCTGCCCAATGTATTTGCAACAGTTCATATCAAAGTGGTAATAAGCGTTCAAAATAAGATCCCAAAAAAGTTAGCAGGAAAGTTCTAGTCTGCCTTTCTCTCTGCTAGTTCCTCAGTCGTCCTCTGCGTATGCAGACCAAGTCCTTGACCTCTAGCCCCAGCCCTTAGCTCTCCCAGTTGTTCTCTTACCTGGTGGGTGATTGGTCG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2174039 lncRNA downstream 325 9468388 ~ 9468642 (-) True G1900815
TU2174034 lncRNA downstream 8172 9460549 ~ 9460795 (-) True G1900810
TU2173932 lncRNA downstream 109801 9357049 ~ 9359166 (-) True LOC110503671
TU2173953 lncRNA downstream 135504 9333188 ~ 9333463 (-) True G1900730
TU2173823 lncRNA downstream 346684 9121832 ~ 9122283 (-) True G1900608
TU2174040 lncRNA upstream 603 9471700 ~ 9472474 (-) True G1900816
TU2174042 lncRNA upstream 4270 9475367 ~ 9475578 (-) True G1900818
TU2174031 lncRNA upstream 36595 9507692 ~ 9508289 (-) True G1900807
TU2174073 lncRNA upstream 45462 9516559 ~ 9519131 (-) True G1900844
TU2174084 lncRNA upstream 57583 9528680 ~ 9528896 (-) True G1900855
XM_036961480.1 mRNA downstream 11110 9439390 ~ 9457857 (-) False LOC110503673
XM_036961787.1 mRNA upstream 48833 9519930 ~ 9525554 (-) False LOC110503678
XM_021582131.2 mRNA upstream 48833 9519930 ~ 9525555 (-) False LOC110503678
XM_036961788.1 mRNA upstream 48833 9519930 ~ 9525556 (-) True LOC110503678
XM_021581792.2 mRNA upstream 62505 9533602 ~ 9536466 (-) True cbln18
XM_021581793.2 mRNA upstream 73708 9544805 ~ 9546072 (-) True cbln20
TU2173065 other downstream 1420993 8046779 ~ 8047974 (-) True G1899875
TU2169441 other downstream 3008902 6458521 ~ 6460065 (-) True LOC110503590
TU2169340 other downstream 3237159 6182412 ~ 6231808 (-) True LOC118944082
TU2169333 other downstream 3270604 6182412 ~ 6198363 (-) False LOC118944082
TU2168814 other downstream 3599749 5868896 ~ 5869218 (-) True G1896030
TU2174075 other upstream 99774 9570871 ~ 9574149 (-) True LOC110503680
TU2174329 other upstream 534275 10005372 ~ 10008340 (-) False G1901072
TU2174330 other upstream 534275 10005372 ~ 10012354 (-) True G1901072
TU2174494 other upstream 734123 10205220 ~ 10205948 (-) True G1901206
TU2174598 other upstream 927945 10399042 ~ 10399857 (-) True G1901302

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU208089 False 1641 lncRNA 0.46 2 CI01000039 8051683 ~ 8053788 (-)