RNA id: TU208089


Basic Information

Item Value
RNA id TU208089
length 1641
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G183241
representative False

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 8051683 ~ 8070531 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCCCATGGACTATATACCATGTTGTTTCAGAAGGGAAGAAAACACTGATTCAAAGAAATTATTTTTGTGCATTTTATTTGTTTGCTTTGTTAAATCAAAGATTATTTAACTTGAAAATAATAAACATTCATTACACAACCCTTGCACCTACAACACAAGAAAATCTGTTCTTTGTTGTTGTCTGAGGATCCGAGTGTCCAAAGTTCTTGTGCATTTTTATGCCTGGACAGCCTTGGAGATGGTGTCATACACCTGTGCAAACCTGGCCCTCACATTCTCCATGTAGGGCTCCATGCGGGCCTGGAGGTCCTGGGTGTGTGGGGTGATCTTCTCCCTGGCATCCTCGACAGCCTTCACCAGCTGTTCCTTGTATTCCTCAGCATAGGGGGCGGCCATGGTCCTCAGCTCCTCCAGACGCTCGGTCAGCTTAGTGCGTACGGCCTCGACCATTGGCACGAGCTTGGACTTGGTCTCCTCAAAGTTGCTCCCAAACATCTGCCTCATTTCATCCAACAGGGGCTGCAGCTTGGCACGCATCTGCTCGGCATTTTCACGGTTCAGGGTGGCATACTCCTGGTAGAGGGGCTCCAGCTTCTCACGGTACTCGTCAATGTGCTTCTGCAGCACCTGGTACAGCTCGGCACGGTGGGGCTCCAGCTTGGAACGGATGTCTTCGATGTCGGTCATGACGCGCTCGCGCAGCTGCTTGGTGTTCTCCAGGAACTGGTTGGAGAAGGTCTCAGTGTAGGGGGTCAGAGTCTGGGAGGTGGTCTGGGCATATTCCTGAAGCTTAGTCAGGCTCTCTGAAAGTTGTCTTGTATTGCTCATAGTCGGTTCCATCCAAATTGTCGAGAGCCTTCTGAGCCTGTTCCTTGACCTGGGTCAGGTACACCAAGGCTGCTGACTTGTAGTGCTCCAGCTGGGAGGGAGCATCAGCCTGCAGGAAACGGGCCTGGGAACCTAAGGAGACGCACAGAAAAAGCTTCAAAAAACAAAGTAAAGACAATCTCAAGCTCTTTAAACTATGTGAAGAAACATATACATTGTCAAATTGTCACCACAAAAACCAAAGCATTAACAAAATCAGTTTTTAAGTTTTTAAGTGGTTGAACTTTGAGTAAAGGTAAAATACTAAACAAAAATGAGATGACATTTAAGTGAAATGTGAAGCAAGGCATGTTACTTACCCACAGCCAAGAGGACAGTCAGTGCAAGAGCCACGAATTTCATGGTTGAGCCCTGAAAGAGAATACAGCTATTATACCATCAAAGGACTTTTGACCAAGGTCTATATAAAAATAATTATATATATTGAAGAGCAACATTATAATATTGTGTTTAACTGTGTCTATGCTAATATCTATGTTCTCTTTGTTTCTATCTTTACTCCTGCCCTCTGTATTCTGAATTGTCTTGATCCAATCCTTTCCTGCTGGTTTGAGCTCTTACCTGAGTGTTGCTGCTCTGAATGTTCGAGGACAGACAGCAGAGACAAAGGCCTTATATAGGGCAGGAACAGTGCGTGTGGAGTTGGAACCCTGTCCTCTTACACATCAGAGGTTCAAAGGGTAGGTGCAATAAGAGACGCCTTTAAGATATCTGTAGACTCGTCAATGCGCTGTCAGTCTCACAAAACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208123 lncRNA downstream 1662 8048791 ~ 8050021 (-) True G183269
TU208191 lncRNA downstream 4087 8047338 ~ 8047596 (-) True G183334
TU208190 lncRNA downstream 4695 8046731 ~ 8046988 (-) True G183333
TU208130 lncRNA downstream 7318 8044031 ~ 8044365 (-) True G183276
TU208186 lncRNA downstream 42633 8008824 ~ 8009050 (-) True G183329
TU208198 lncRNA upstream 21331 8075119 ~ 8075355 (-) True G183341
TU208126 lncRNA upstream 24422 8078210 ~ 8078614 (-) True G183272
TU208124 lncRNA upstream 27234 8081022 ~ 8088703 (-) True G183270
TU208135 lncRNA upstream 59378 8113166 ~ 8113720 (-) True G183281
TU208120 lncRNA upstream 61791 8115579 ~ 8118145 (-) True G183266
CI01000039_08038068_08041738.mRNA mRNA downstream 9945 8036919 ~ 8041738 (-) True CI01000039_08038068_08041738
CI01000039_08022279_08026193.mRNA mRNA downstream 25490 8021899 ~ 8026193 (-) True CI01000039_08022279_08026193
CI01000039_08003424_08011297.mRNA mRNA downstream 39150 8003410 ~ 8012533 (-) False CI01000039_08003424_08011297
CI01000039_07987279_07996351.mRNA mRNA downstream 54762 7987212 ~ 7996921 (-) True CI01000039_07987279_07996351
CI01000039_07952703_07961286.mRNA mRNA downstream 89664 7952286 ~ 7962019 (-) True CI01000039_07952703_07961286
CI01000039_08062731_08064494.mRNA mRNA upstream 8805 8062593 ~ 8064494 (-) True CI01000039_08062731_08064494
CI01000039_08065500_08069266.mRNA mRNA upstream 11712 8065500 ~ 8069690 (-) True CI01000039_08065500_08069266
CI01000039_08102220_08109961.mRNA mRNA upstream 48190 8101978 ~ 8109961 (-) True CI01000039_08102220_08109961
CI01000039_08127858_08129554.mRNA mRNA upstream 73825 8127613 ~ 8129689 (-) True CI01000039_08127858_08129554
CI01000039_08131887_08142840.mRNA mRNA upstream 77052 8130840 ~ 8145112 (-) True CI01000039_08131887_08142840
TU208115 other downstream 76638 7972116 ~ 7975045 (-) True G183261
TU207766 other downstream 913916 7134107 ~ 7134198 (-) True G182956
TU207638 other downstream 1403107 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 1416483 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 1543250 6507955 ~ 6508433 (-) True G182771

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2173935 True 2016 lncRNA 0.50 2 NC_048588.1 9468967 ~ 9471097 (-)