RNA id: CI01000039_08003424_08011297.mRNA


Basic Information

Item Value
RNA id CI01000039_08003424_08011297.mRNA
length 2579
RNA type mRNA
GC content 0.40
exon number 13
gene id CI01000039_08003424_08011297
representative False

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 8003410 ~ 8012533 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATCAATCCTGGTAACAACACTGTGTTTGAAATCAACATTTAAGGTGTCATTTATTGGACAATTATTACATATTGTTTTGTGAATTGAAATATAGAGAACAGATACACAATAAACTTTCAATCATCTGGATTTTGTTAGACTTACTATGAGTATTTAAGTTTATATCACAAAAGACTGTGCTGATAAATAGACAATGCTTTTTCAAACCATTTTCTGCTGGAGTCAGTGCACTATGTGCAGCAAAAATAGGTTTAATATTGAATCTCTACTGTGTAGGCTACTCAATACACTGTGCTGCTTATGCAGGTGTATATAATACCATAACCTATTAATATGGGAGCTGAAATAAAAATACTCTGCTATCATGTATAACGTACAACAGGTCTCACACCATTTTATGATAAATGGCCGATATAAAAATATACTCAATGTAGTATACCAGAAATCACTTTATTTTGTTATATAGTGCTGCAGCTGCTGAAAGCACAATGTGTGTGATGTGAAACAGGCCTAAGATAAGTCTGGTCTCTTTATGAAAAACAGTACAACAAATTCAAGACAAACAATGCTTATAAGTGTAAAAATATGCAATTATATGCAATTAAATAGCTGAGATGTCCAAATTGCTCTGTCTCAACTCCATGCAACGTCTTTATAATGTCAATGTGTATGTATGTACACAAGTGCGTGTACGGGGTCATTTAAACACACATTTGAATATGGAGCAAGGGGTTCTTGCATGCTCACACATTAGGTCAAGCAAGACCAAAAAAGAAATAAATAAATGAATAAAATTGGCATTTTGGTGTCTTATCAGCACGTTTATGTCTCACATGGTAATGGTAATCCTCCAGTCCATATTTGTATCAGAAAAATCTGCATCACACACATTCAAAATATACTAGAAATGAGGATTACAATTTTTGAATGTTCTTAAATTGATTTGGCAATAAGAGAATGGTTCAAATTACCAATAATTTGGTAATTTGAACATCAAATTACCTTAAAATTATAACTGTACATACATTATGACAATATAATGTGGTAATATATGTACTAAACATTTACTCAGCAAATTACTGTTTTAAGGTGAAATCTGTACTTGTTAAACAGAAAAGCAGTCCCACTGCATAAAGCAGGGCCTTGAATAGGCCTATAAGACTTATCATAAATGTATAAACAATTCATTTGAAATCTGATTGGTAGTACAGTTGTTTACAGTGAATTTAAGTGAATGACGGATGAGAACGAACAGTTCCCGTCACAGAGAAGGCAAGCTCTCTCTTACAAGAGCAAAAGGTGTTGCTATGGAGGGTCTAGTGGTACTGTTGTTGTTGTAGTGTTGGTTGTAATCGCCATCTGGCTGGGAGTGCGTTATGGGCCGTCACTGTGGGCTCTCTCCGAGAGAGAAACAACAAAAGACACATGCCCCCCTTCATCCGTTGACTGTGATGGGAAGAGAGACTGTTCTCAAGGCACTGATGAATCTCGCTGTGTGCGGTTTGGTACAGCAAATGAATTGCAGGTCATGACCTCTAAGTCCGGGCTCTTCCTTCCAGTCTGCGCACAGGGCTGGAATAAAAACTTAGCTGACCAAACCTGCCAACAGCTTGGCTTTAGACAGAGTCATATATATGGTGTCTTGCAAACCAACTCACCCTCCTTTCAAAGTGTGAACAGTCAGTTTACAAACACCATCCAGGGGAGCGTTAACAGAAGTACGTCCTGTCCTGGTCAGCAGACCGTGTCCCTGAACTGCAGCAAATGTGGAAAGCCACCGGTCTCCACGAGGATCATAGGGGGAAGTGTGGCTGCTGACGGTCATTGGCCGTGGCAGGCCAGTCTGCATTTCCAAGGGTATCACACATGTGGAGGAACTCTGTTGGCTCAAGACTTCATCATTACAGCTGCTCACTGCTTCCCCAAAGAAACACCCGGCTCTCAGTTGCCTAGTAACTGGAAAGTGTATATTGGTTTGGTGTCCCAGCTCCAGCTTCCCAGCCCATATTTTGTAAAGCAAATCATTTTACATGAGAATTATGACCCAGCGACAAAAAACAATGACATCGCCTTGCTAAAACTCAATAATCCTGCCACCAGTAGTTCCACTTCTTTGATGGAGGTCAAAGTAGACCTGATAGACTCAACTGTGTGTAACTCACTTACTGTTTATGACGGACGAATCACTGAGAATATGCAGTGTGCAGGAGATCTTGGGGGAGGGAAAGACTCCTGCCAGGGCGACAGTGGGGGTCCATTGGTGTGTAAAGTTGATGATCAATGGTTTCTCACAGGCGTAACAAGTTGGGGAGATGGCTGTGGAAAGCAGAACCGTCCAGGGGTCTACAGTAACGTAGGGCGACTTTTAATGTGGATATATGGCAAGATGCAGGTTTTTAGCCAAAATTTGCTGAAAATTAAAACAGCACTACTGAAGACAAATTCTTTCCTCTCTGAAAAGAACAAACTGAGTATTCAGATGCTGATTTCACCTATGGCAAAAAGCTCAAATGTGGAAACAAGTCATCTGCTAAGTAAGGCACACACGATATTCATCTTGTAAAAAGATACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208185 lncRNA downstream 26362 7975563 ~ 7977048 (-) True G183328
TU208109 lncRNA downstream 38027 7962056 ~ 7965383 (-) True G183255
TU208176 lncRNA downstream 80463 7922737 ~ 7922947 (-) True G183319
TU208131 lncRNA downstream 82772 7919713 ~ 7920638 (-) True G183277
TU208172 lncRNA downstream 104577 7895793 ~ 7898833 (-) True G183316
TU208130 lncRNA upstream 31498 8044031 ~ 8044365 (-) True G183276
TU208190 lncRNA upstream 34198 8046731 ~ 8046988 (-) True G183333
TU208191 lncRNA upstream 34805 8047338 ~ 8047596 (-) True G183334
TU208123 lncRNA upstream 36258 8048791 ~ 8050021 (-) True G183269
TU208089 lncRNA upstream 39150 8051683 ~ 8053788 (-) False G183241
CI01000039_07987279_07996351.mRNA mRNA downstream 6489 7987212 ~ 7996921 (-) True CI01000039_07987279_07996351
CI01000039_07952703_07961286.mRNA mRNA downstream 41391 7952286 ~ 7962019 (-) True CI01000039_07952703_07961286
CI01000039_07908291_07909766.mRNA mRNA downstream 92942 7907904 ~ 7910468 (-) True CI01000039_07908291_07909766
CI01000039_07781930_07783389.mRNA mRNA downstream 219716 7781890 ~ 7783694 (-) True CI01000039_07781930_07783389
CI01000039_07658015_07658757.mRNA mRNA downstream 344358 7657540 ~ 7659052 (-) True CI01000039_07658015_07658757
CI01000039_08022279_08026193.mRNA mRNA upstream 9366 8021899 ~ 8026193 (-) True CI01000039_08022279_08026193
CI01000039_08038068_08041738.mRNA mRNA upstream 24386 8036919 ~ 8041738 (-) True CI01000039_08038068_08041738
CI01000039_08062731_08064494.mRNA mRNA upstream 50060 8062593 ~ 8064494 (-) True CI01000039_08062731_08064494
CI01000039_08065500_08069266.mRNA mRNA upstream 52967 8065500 ~ 8069690 (-) True CI01000039_08065500_08069266
CI01000039_08102220_08109961.mRNA mRNA upstream 89445 8101978 ~ 8109961 (-) True CI01000039_08102220_08109961
TU208115 other downstream 28365 7972116 ~ 7975045 (-) True G183261
TU207766 other downstream 865643 7134107 ~ 7134198 (-) True G182956
TU207638 other downstream 1354834 6647527 ~ 6648576 (-) False CI01000039_06647926_06651530
TU207627 other downstream 1368210 6634547 ~ 6635200 (-) True G182827
TU207563 other downstream 1494977 6507955 ~ 6508433 (-) True G182771

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060691 False 1813 mRNA 0.45 13 NC_007116.7 37888114 ~ 37900395 (-)