G183241


Basic Information

Item Value
gene id G183241
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 8051683 ~ 8070531 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU208089
GGCCCATGGACTATATACCATGTTGTTTCAGAAGGGAAGAAAACACTGATTCAAAGAAATTATTTTTGTGCATTTTATTTGTTTGCTTTGTTAAATCAAAGATTATTTAACTTGAAAATAATAAACATTCATTACACAACCCTTGCACCTACAACACAAGAAAATCTGTTCTTTGTTGTTGTCTGAGGATCCGAGTGTCCAAAGTTCTTGTGCATTTTTATGCCTGGACAGCCTTGGAGATGGTGTCATACACCTGTGCAAACCTGGCCCTCACATTCTCCATGTAGGGCTCCATGCGGGCCTGGAGGTCCTGGGTGTGTGGGGTGATCTTCTCCCTGGCATCCTCGACAGCCTTCACCAGCTGTTCCTTGTATTCCTCAGCATAGGGGGCGGCCATGGTCCTCAGCTCCTCCAGACGCTCGGTCAGCTTAGTGCGTACGGCCTCGACCATTGGCACGAGCTTGGACTTGGTCTCCTCAAAGTTGCTCCCAAACATCTGCCTCATTTCATCCAACAGGGGCTGCAGCTTGGCACGCATCTGCTCGGCATTTTCACGGTTCAGGGTGGCATACTCCTGGTAGAGGGGCTCCAGCTTCTCACGGTACTCGTCAATGTGCTTCTGCAGCACCTGGTACAGCTCGGCACGGTGGGGCTCCAGCTTGGAACGGATGTCTTCGATGTCGGTCATGACGCGCTCGCGCAGCTGCTTGGTGTTCTCCAGGAACTGGTTGGAGAAGGTCTCAGTGTAGGGGGTCAGAGTCTGGGAGGTGGTCTGGGCATATTCCTGAAGCTTAGTCAGGCTCTCTGAAAGTTGTCTTGTATTGCTCATAGTCGGTTCCATCCAAATTGTCGAGAGCCTTCTGAGCCTGTTCCTTGACCTGGGTCAGGTACACCAAGGCTGCTGACTTGTAGTGCTCCAGCTGGGAGGGAGCATCAGCCTGCAGGAAACGGGCCTGGGAACCTAAGGAGACGCACAGAAAAAGCTTCAAAAAACAAAGTAAAGACAATCTCAAGCTCTTTAAACTATGTGAAGAAACATATACATTGTCAAATTGTCACCACAAAAACCAAAGCATTAACAAAATCAGTTTTTAAGTTTTTAAGTGGTTGAACTTTGAGTAAAGGTAAAATACTAAACAAAAATGAGATGACATTTAAGTGAAATGTGAAGCAAGGCATGTTACTTACCCACAGCCAAGAGGACAGTCAGTGCAAGAGCCACGAATTTCATGGTTGAGCCCTGAAAGAGAATACAGCTATTATACCATCAAAGGACTTTTGACCAAGGTCTATATAAAAATAATTATATATATTGAAGAGCAACATTATAATATTGTGTTTAACTGTGTCTATGCTAATATCTATGTTCTCTTTGTTTCTATCTTTACTCCTGCCCTCTGTATTCTGAATTGTCTTGATCCAATCCTTTCCTGCTGGTTTGAGCTCTTACCTGAGTGTTGCTGCTCTGAATGTTCGAGGACAGACAGCAGAGACAAAGGCCTTATATAGGGCAGGAACAGTGCGTGTGGAGTTGGAACCCTGTCCTCTTACACATCAGAGGTTCAAAGGGTAGGTGCAATAAGAGACGCCTTTAAGATATCTGTAGACTCGTCAATGCGCTGTCAGTCTCACAAAACACAA
>TU208092
GGCCCATGGACTATATACCATGTTGTTTCAGAAGGGAAGAAAACACTGATTCAAAGAAATTATTTTTGTGCATTTTATTTGTTTGCTTTGTTAAATCAAAGATTATTTAACTTGAAAATAATAAACATTCATTACACAACCCTTGCACCTACAACACAAGAAAATCTGTTCTTTGTTGTTGTCTGAGGATCCGAGTGTCCAAAGTTCTTGTGCATTTTTATGCCTGGACAGCCTTGGAGATGGTGTCATACACCTGTGCAAACCTGGCCCTCACATTCTCCATGTAGGGCTCCATGCGGGCCTGGAGGTCCTGGGTGTGTGGGGTGATCTTCTCCCTGGCATCCTCGACAGCCTTCACCAGCTGTTCCTTGTATTCCTCAGCATAGGGGGCGGCCATGGTCCTCAGCTCCTCCAGACGCTCGGTCAGCTTAGTGCGTACGGCCTCGACCATTGGCACGAGCTTGGACTTGGTCTCCTCAAAGTTGCTCCCAAACATCTGCCTCATTTCATCCAACAGGGGCTGCAGCTTGGCACGCATCTGCTCGGCATTTTCACGGTTCAGGGTGGCATACTCCTGGTAGAGGGGCTCCAGCTTCTCACGGTACTCGTCAATGTGCTTCTGCAGCACCTGGTACAGCTCGGCACGGTGGGGCTCCAGCTTGGAACGGATGTCTTCGATGTCGGTCATGACGCGCTCGCGCAGCTGCTTGGTGTTCTCCAGGAACTGGTTGGAGAAGGTCTCAGTGTAGGGGGTCAGAGTCTGGGAGGTGGTCTGGGCATATTCCTGAAGCTTAGTCAGGCTCTCTGAAAGTGTGCCTTACTTGTATTGCTCATAGTCGGTTCCATCCAAATTGTCGAGAGCCTTCTGAGCCTGTTCCTTGACCTGGGTCAGGTACACCAAGGCTGCTGACTTGTAGTGCTCCAGCTGGGAGGGAGCATCAGCCTGCAGGAAACGGGCCTGGGAACCTAAGGAGACGCACAGAAAAAGCTTCAAAAAACAAAGTAAAGACAATCTCAAGCTCTTTAAACTATGTGAAGAAACATATACATTGTCAAATTGTCACCACAAAAACCAAAGCATTAACAAAATCAGTTTTTAAGTTTTTAAGTGGTTGAACTTTGAGTAAAGGTAAAATACTAAACAAAAATGAGATGACATTTAAGTGAAATGTGAAGCAAGGCATGTTACTTACCCACAGCCAAGAGGACAGTCAGTGCAAGAGCCACGAATTTCATGGTTGAGCCCTGAAAGAGAATACAGCTATTATACCATCAAAGGACTTTTGACCAAGGTCTATATAAAAATAATTATATATATTGAAGAGCAACATTATAATATTGTGTTTAACTGTGTCTATGCTAATATCTATGTTCTCTTTGTTTCTATCTTTACTCCTGCCCTCTGTATTCTGAATTGTCTTGATCCAATCCTTTCCTGCTGGTTTGAGCTCTTACCTGAGTGTTGCTGCTCTGAATGTTCGAGGACAGACAGCAGAGACAAAGGCCTTATATAGGGCAGGAACAGTGCGTGTGGAGTTGGAACCCTGTCCTCTTACACATCAGAGGTTCAAAGGGTAGGTGCAATAAGAGACGCCTTTAAGATATCTGTAGACTCGTCAATGCGCTGTCAGTCTCACAAAACACAA
>TU208093
GGATAGTAGGCTATGGGATTGCGATCATATTGACCCCATACACAGAGTGTGACTTTTTTTTTTTTTTTTTTTTTATTATTTTTGTGCATTTTATTTGTTTGCTTTGTTAAATCAAAGATTATTTAACTTGAAAATAATAAACATTCATTACACAACCCTTGCACCTACAACACAAGAAAATCTGTTCTTTGTTGTTGTCTGAGGATCCGAGTGTCCAAAGTTCTTGTGCATTTTTATGCCTGGACAGCCTTGGAGATGGTGTCATACACCTGTGCAAACCTGGCCCTCACATTCTCCATGTAGGGCTCCATGCGGGCCTGGAGGTCCTGGGTGTGTGGGGTGATCTTCTCCCTGGCATCCTCGACAGCCTTCACCAGCTGTTCCTTGTATTCCTCAGCATAGGGGGCGGCCATGGTCCTCAGCTCCTCCAGACGCTCGGTCAGCTTAGTGCGTACGGCCTCGACCATTGGCACGAGCTTGGACTTGGTCTCCTCAAAGTTGCTCCCAAACATCTGCCTCATTTCATCCAACAGGGGCTGCAGCTTGGCACGCATCTGCTCGGCATTTTCACGGTTCAGGGTGGCATACTCCTGGTAGAGGGGCTCCAGCTTCTCACGGTACTCGTCAATGTGCTTCTGCAGCACCTGGTACAGCTCGGCACGGTGGGGCTCCAGCTTGGAACGGATGTCTTCGATGTCGGTCATGACGCGCTCGCGCAGCTGCTTGGTGTTCTCCAGGAACTGGTTGGAGAAGGTCTCAGTGTAGGGGGTCAGAGTCTGGGAGGTGGTCTGGGCATATTCCTGAAGCTTAGTCAGGCTCTCTGAAAGTTGTGCCTTGTATTGCTCATAGTCGGTTCCATCCAAATTGTCGAGAGCCTTCTGAGCCTGTTCCTTGACCTGGGTCAGGTACACCAAGGCTGCTGACTTGTAGTGCTCCAGCTGGGAGGGAGCATCAGCCTGCAGGAAACGGGCCTGGGAACCCACAGCCAAGAGGACAGTCAGTGCAAGAGCCACGAATTTCATGGTTGAGCCCTGAGTGTTGCTGCTCTGAATGTTCGAGGACAGACAGCAGAGACAAAGGCCTTATATAGGGCAGGAACAGTGCGTGTGGAGTTGGAACCCTGTCCTCTTACACATCAGAGGTTCAAAGGGTAGGTGCAATAAGAGACGCCTTTAAGATATCTGTAGACTCGTCAATGCGCTGTCAGTCTCACAAAACACAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU208089 False 1641 lncRNA 0.46 2 8051683 8053788
TU208092 False 1646 lncRNA 0.46 2 8051683 8053788
TU208093 True 1222 lncRNA 0.51 5 8051683 8070531

Neighbor

gene id symbol gene type direction distance location
CI01000039_08038068_08041738 NA coding downstream 9945 8036919 ~ 8041738 (-)
CI01000039_08022279_08026193 SCN4BB coding downstream 25490 8021899 ~ 8026193 (-)
CI01000039_08003424_08011297 NA coding downstream 39150 8003410 ~ 8012533 (-)
CI01000039_07987279_07996351 ARHGAP35 coding downstream 54762 7987212 ~ 7996921 (-)
CI01000039_07952703_07961286 NA coding downstream 89664 7952286 ~ 7962019 (-)
CI01000039_08102220_08109961 NA coding upstream 31447 8101978 ~ 8109961 (-)
CI01000039_08127858_08129554 NA coding upstream 57082 8127613 ~ 8129689 (-)
CI01000039_08131887_08142840 GC3, OLGC3, GUCY2D, OLGC5, GUCY2F coding upstream 60309 8130840 ~ 8145112 (-)
CI01000039_08160613_08163045 NA coding upstream 89949 8160480 ~ 8163045 (-)
CI01000039_08175148_08187608 SLC12A9 coding upstream 104452 8174983 ~ 8187608 (-)
G183269 NA non-coding downstream 1662 8048791 ~ 8050021 (-)
G183334 NA non-coding downstream 4087 8047338 ~ 8047596 (-)
G183333 NA non-coding downstream 4695 8046731 ~ 8046988 (-)
G183276 NA non-coding downstream 7318 8044031 ~ 8044365 (-)
G183329 NA non-coding downstream 42633 8008824 ~ 8009050 (-)
G183341 NA non-coding upstream 4588 8075119 ~ 8075355 (-)
G183272 NA non-coding upstream 7679 8078210 ~ 8078614 (-)
G183270 NA non-coding upstream 10491 8081022 ~ 8088703 (-)
G183281 NA non-coding upstream 42635 8113166 ~ 8113720 (-)
G183266 NA non-coding upstream 45048 8115579 ~ 8118145 (-)
G183261 NA other downstream 76638 7972116 ~ 7975045 (-)
CI01000039_07134422_07137732 NA other downstream 913916 7134422 ~ 7137767 (-)
CI01000039_06647926_06651530 NA other downstream 1403107 6646544 ~ 6653449 (-)
G182827 NA other downstream 1416483 6634547 ~ 6635200 (-)
G182771 NA other downstream 1543250 6507955 ~ 6508433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030293 apoa1a coding NC_007116.7 CM002889.2 37978501 ~ 37981521 (+)