RNA id: TCONS_00053756


Basic Information

Item Value
RNA id TCONS_00053756
length 1938
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_027313
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 20812900 ~ 20987564 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACAGTAGTGTTAGTGGGGTAACACTGGAACTTTGAATGGAATACACATTGTTGTGGTGTGTGTTTTCAAAGTTTAACAATCATTTGTCAAGTTTTTGGTTTgggtatttcttttttttttggtccacgGTGTGACATTTTATGTTTAGGTGTTTAGTTCCTTTTTTGGAAGTTCTctgttctgctttgaaaatgagATGTTTTTCTGTTGGGAGTCTCACCGCACGATATACAAGTCCACCAGGTCACAGTGGAATAGCAGCCCCTCAGAAGAAAAACACAAGGTTGCCAGGTCCGTCCAGAGTCCCCGCTGCAGGCAGCGGCAGTAACAGCAGTAAAGGCTCCTCAAACCTGAACAGAAGAAGCCAGAGCTTTAACAGTATTGATAAGAGCAAACCATTGCAGTATGCTAGCGGCAACGACAGAGAGTCGGTGAAGGGCATCCCTCTGCCAGGCAGCATGAACGGCAGTGGCTCAGTGCCTTCCAGCACCAGCGGGCAGCAGCTGGCCTCTGCCATTCCCTCTCCCACTGCTGGAAAGACCTGGCGCAGCAAGTCCATGAACATGAAGCACAGTGCCACCTCGTCCATGCTGGCCACTAAGCCGCCCAGCCCAACCTCATCCCCTACCCCTCCCTCATCATCCGATCGCCTCCGGCCCCCAATCACAGATGCCTCCAAATCAGCCCCCGGTAACCAGCGTTCCATGTTGGAAAAGTTCCGGATCCTCAACCCTCGCGCCACATCCAGAACCTCTCCCTCTGTGGCTGAAATGGCTCTCCAGGAGGAGGATGACTTGTCAGAGTTTGGAGATGAGGGAACTTTCAGTCCTACACCACCCTGCGGGATCTCAAAACAGCAGGGGAAGCCCTCTGCATCTGCATTTGCACCCCCAAGCAAGTCCAACAACTGTAAGAACCACAACAATAAGTCCTTGCCACAACCCAAAGACAAAGAGGACAAGAACAAGACCAAGAACAAAGCCAGCACACCTCCCAAAGAAGAGCCAGTAATAGTGGAGACCTCAAAGAAAGGCTCCAAGATTGCTAGCCTCATCCCCAAAGGAAGCAAAACATCCGCTGCCTCTGTGAAGAAAGAAAGTGCAATCCCTGCCTCCAGCAGTATCCCCAAGCCTGGTCTGAAAGCTCCAACAGCAACCTCCAAACCTGCAGGAACCCAATCTTGTGTACCTGCAACTACCGGTGGGGAGAAGACCAAACTTAACAAGGGCAGTCAGTCCATATATATGCAGAGATCTCTGGGAGGCTTGGAGAACCGTAAGACCAGCATGGTGTTGTCAACCAGTACCTCAGCTCTTTCTGCATCCACCACTTCAGGACTGGGGGGTGGTTGTGCTCTAGGTGGTAATGGAGCAGTACAGCTTCCCCAGCAGCAACAACATAACCATCCCAACACAGCGACAGTCGCCCCCTTTATGTATCGGACGTATTCAGAGAACGACTGCACGACCGTGGTCCCTCCTGAACCTTGTCTCAGTCCCACAAAAGAACTGGTCTACGGCAAGACCGCCAAACAGTGCCTGGAGGAGATCTCAGGAGAAGATCCAGAAACTAGACGGATGCGTACAGTGAAGAACATTGCTGATCTGAGACAGAATCTGGAAGAAACCATGTCCAGTTTACGGGGGACGCAGATTACCCACAGGTTAGTGTTAAAATCGTCAAAATGCCCAGAGAAGATTAGCTTATGGAATAACAAAATTTAGACAGTGAAACTGGTGGACCATCATGCTCTTAAAGTAACATTACTTTTTAGGGAAATAGGcccattttacaactcccctagagttagacagttgagttttaccaaatttttaattcattcagctgatctcagGATTTGACAGgagcattttagcttagcttagcataaatcattgaatcagaatagaccattagcatcttcctcaaaaaatgt

Function

GO:

id name namespace
GO:0031016 pancreas development biological_process
GO:0007399 nervous system development biological_process
GO:0072576 liver morphogenesis biological_process
GO:0022008 neurogenesis biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030175 filopodium cellular_component
GO:0005634 nucleus cellular_component
GO:0005640 nuclear outer membrane cellular_component
GO:0030027 lamellipodium cellular_component
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-021205-1 Enables actin binding activity. Acts upstream of or within liver morphogenesis and pancreas development. Located in Golgi apparatus; filopodium; and lamellipodium. Is expressed in several structures, including cardiovascular system; digestive system; liver primordium; nervous system; and periderm. Orthologous to human NAV3 (neuron navigator 3).

Ensembl:

ensembl_id ENSDART00000036886

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057724 lncRNA upstream 294275 20554607 ~ 20593055 (+) True XLOC_027308
TCONS_00057148 lncRNA upstream 326113 20560702 ~ 20561217 (+) True XLOC_027310
TCONS_00057147 lncRNA upstream 326977 20558526 ~ 20560353 (+) True XLOC_027309
TCONS_00057146 lncRNA upstream 337142 20547687 ~ 20550188 (+) True XLOC_027307
TCONS_00053750 lncRNA upstream 352373 20531757 ~ 20534957 (+) False XLOC_027306
TCONS_00057149 lncRNA downstream 108521 21028784 ~ 21032756 (+) True XLOC_027314
TCONS_00057725 lncRNA downstream 402724 21322987 ~ 21323980 (+) True XLOC_027316
TCONS_00053760 lncRNA downstream 733346 21653609 ~ 21696284 (+) True XLOC_027317
TCONS_00053768 lncRNA downstream 1045831 21966094 ~ 21967444 (+) True XLOC_027323
TCONS_00057726 lncRNA downstream 1102362 22022625 ~ 22113703 (+) False XLOC_027324
TCONS_00053752 mRNA upstream 275165 20545448 ~ 20612165 (+) False XLOC_027307
TCONS_00053754 mRNA upstream 304346 20576857 ~ 20582984 (+) True XLOC_027312
TCONS_00053753 mRNA upstream 316028 20566371 ~ 20571302 (+) True XLOC_027311
TCONS_00053751 mRNA upstream 341865 20536120 ~ 20545465 (+) False XLOC_027307
TCONS_00053749 mRNA upstream 387662 20486041 ~ 20499668 (+) True XLOC_027305
TCONS_00053757 mRNA downstream 34666 20954929 ~ 20959200 (+) True XLOC_027313
TCONS_00053758 mRNA downstream 209489 21129752 ~ 21315399 (+) False XLOC_027315
TCONS_00053759 mRNA downstream 286020 21206283 ~ 21312841 (+) True XLOC_027315
TCONS_00053761 mRNA downstream 797530 21717793 ~ 21720943 (+) True XLOC_027318
TCONS_00053762 mRNA downstream 820965 21741228 ~ 21745100 (+) False XLOC_027319
TCONS_00053730 other upstream 1789886 19097324 ~ 19097444 (+) True XLOC_027292
TCONS_00053726 other upstream 1970248 18916968 ~ 18917082 (+) True XLOC_027289
TCONS_00053705 other upstream 3032915 17852459 ~ 17854415 (+) True XLOC_027274
TCONS_00053701 other upstream 3192926 17692170 ~ 17694404 (+) True XLOC_027272
TCONS_00053700 other upstream 3198005 17671631 ~ 17689325 (+) False XLOC_027272
TCONS_00053764 other downstream 823600 21743863 ~ 21743984 (+) True XLOC_027320
TCONS_00053765 other downstream 921590 21841853 ~ 21841969 (+) True XLOC_027321
TCONS_00053781 other downstream 2206941 23127204 ~ 23132524 (+) False XLOC_027335
TCONS_00053783 other downstream 2207044 23127307 ~ 23129633 (+) False XLOC_027335
TCONS_00053784 other downstream 2212279 23132542 ~ 23134536 (+) False XLOC_027335

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000019_04744664_04778482.mRNA True 2959 mRNA 0.53 13 CI01000019 4744554 ~ 4778661 (-)