RNA id: TU2380474


Basic Information

Item Value
RNA id TU2380474
length 214
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC110507223
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 39781189 ~ 39938079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagttacagacgcaccaATATCATACCTTCAAGAGGTATGCTAACCTTTCAcccttacaataacaggggaaaTTAGCATTTTTCGGCGGGGGTATGACATTTGTGCATCtgtgattcattcaggattatccgtaatcatggtcacatccacattaatgtagatgtgtttagaaaacatattatattattatttacaataaaagtgactccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2380572 lncRNA upstream 13364 39923502 ~ 39923717 (+) True G2081943
TU2380571 lncRNA upstream 15031 39921825 ~ 39922050 (+) True G2081942
TU2380555 lncRNA upstream 49528 39886726 ~ 39887553 (+) True G2081926
TU2380538 lncRNA upstream 74428 39858460 ~ 39862653 (+) True G2081909
TU2380468 lncRNA upstream 114560 39776162 ~ 39822521 (+) True G2081845
TU2380579 lncRNA downstream 2780 39940074 ~ 39940355 (+) True G2081950
TU2380811 lncRNA downstream 8310 39945604 ~ 39945812 (+) True G2082145
TU2380813 lncRNA downstream 8558 39945852 ~ 39946484 (+) True G2082147
TU2380829 lncRNA downstream 21570 39958864 ~ 39959203 (+) True G2082163
TU2380830 lncRNA downstream 22881 39960175 ~ 39960409 (+) True G2082164
XM_036964981.1 mRNA upstream 235869 39694561 ~ 39701212 (+) True LOC110507222
XM_036965220.1 mRNA upstream 255521 39667989 ~ 39681560 (+) False LOC110508028
XM_036965219.1 mRNA upstream 256949 39668004 ~ 39680132 (+) True LOC110508028
XR_005040116.1 mRNA upstream 897456 39039573 ~ 39039625 (+) True LOC118944799
XM_021588440.2 mRNA upstream 1308911 38619550 ~ 38628170 (+) True LOC110508002
XM_021586905.2 mRNA downstream 357537 40294831 ~ 40297552 (+) False ssr3
NM_001160569.1 mRNA downstream 357546 40294840 ~ 40297545 (+) True ssr3
XM_036965107.1 mRNA downstream 723952 40661246 ~ 40670079 (+) False LOC110508037
XM_036965110.1 mRNA downstream 724018 40661312 ~ 40670079 (+) False LOC110508037
XM_036965108.1 mRNA downstream 724021 40661315 ~ 40670079 (+) False LOC110508037
TU2380578 other upstream 3246 39931874 ~ 39933835 (+) True G2081949
TU2380477 other upstream 24003 39895667 ~ 39913078 (+) False LOC110507223
TU2380510 other upstream 99698 39827658 ~ 39837383 (+) True G2081884
TU2378436 other upstream 1991930 37944932 ~ 37945151 (+) True G2080014
TU2377942 other upstream 2117795 37815878 ~ 37819286 (+) False G2079657
TU2380828 other downstream 19921 39957215 ~ 39957751 (+) True G2082162
TU2381755 other downstream 906220 40843514 ~ 40844780 (+) False LOC110508042
TU2381759 other downstream 907535 40844829 ~ 40846039 (+) False LOC110508042
TU2381889 other downstream 1044076 40981370 ~ 40984854 (+) True G2083005
TU2382143 other downstream 1274910 41212204 ~ 41212772 (+) True G2083239

Expression Profile