RNA id: TCONS_00057305


Basic Information

Item Value
RNA id TCONS_00057305
length 722
lncRNA type sense_over
GC content 0.51
exon number 6
gene id XLOC_028364
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 134412 ~ 149334 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgtgtgtgtgtgtgtgtttctctccgCAGGTCTACCCTATAATGAAGAGCAGATCCACAAGTTTGACAAgcaGAAGCTGGTCCTTCACGCCACTAAAGCGCGAGCTCTGTTCACAGACGAGTGTGCCATGAAGTATCGCCTCTTCATCTCCAAGAGTGAGGAGTGGATGAAGAAGTTTCATCACGTGCGGAAGCATCTCCTGTCTCTGACTGGTCAGTTCAGCAGCCTGGAGCAGGAAGTGACTCTCCTCATGCAGCGCCTGTATAAGctgCTGGAGCAGTTCCCACAGAAGGTGGTCCCGATGGCGTCTGGTGTCCTGAAGCCGCAGGCGTATCTGAGCCCCAGCACACTCGTGGAGATGACCCTTGGGATGAAGAAACTGAAGGAGGAGATGGAGGGAGTGGTGAAGGAGCTGGCGGAGAacaacctgttcctggagagATTCGGCTCACTGACGGTGGATGGAGGAATGAGGACAGTGGAGCGGATgtgacatatacacacacacacacacactttcacatacACAgagatgcacacatacacacacacacacacacacacagtctctgtCTGTCTCTTGTACATATGGACAGTCTGtatatactctctctctctctctgcttcagTTGCGTCAGGATCAGCACTGTTACTGTTTTAAGTTCTGCTCTTCTcctcatcagtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04014 Ras signaling pathway
ko04140 Autophagy - animal
ko04137 Mitophagy - animal
ko04620 Toll-like receptor signaling pathway
ko04621 NOD-like receptor signaling pathway
ko04622 RIG-I-like receptor signaling pathway
ko04623 Cytosolic DNA-sensing pathway
ko04657 IL-17 signaling pathway
ko05170 Human immunodeficiency virus 1 infection
ko05161 Hepatitis B
ko05160 Hepatitis C
ko05171 Coronavirus disease - COVID-19
ko05164 Influenza A
ko05162 Measles
ko05168 Herpes simplex virus 1 infection
ko05163 Human cytomegalovirus infection
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05169 Epstein-Barr virus infection
ko05165 Human papillomavirus infection
ko05131 Shigellosis
ko05135 Yersinia infection
ko05014 Amyotrophic lateral sclerosis
ko05022 Pathways of neurodegeneration - multiple diseases
ko05417 Lipid and atherosclerosis
ko01001 Protein kinases
ko04131 Membrane trafficking

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057304 lncRNA downstream 15769 116322 ~ 119194 (-) True XLOC_028362
TCONS_00057974 lncRNA downstream 33586 99991 ~ 101377 (-) True XLOC_028360
TCONS_00057973 lncRNA downstream 60355 73430 ~ 74608 (-) True XLOC_028359
TCONS_00057972 lncRNA downstream 62305 71463 ~ 72658 (-) True XLOC_028358
TCONS_00057971 lncRNA downstream 77863 56025 ~ 57100 (-) False XLOC_028357
TCONS_00055106 lncRNA upstream 192014 329771 ~ 330713 (-) True XLOC_028371
TCONS_00057975 lncRNA upstream 255794 393551 ~ 396819 (-) True XLOC_028373
TCONS_00055110 lncRNA upstream 545204 682961 ~ 685433 (-) False XLOC_028374
TCONS_00055112 lncRNA upstream 563855 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057306 lncRNA upstream 586073 723830 ~ 732484 (-) True XLOC_028376
TCONS_00055094 mRNA downstream 1471 128697 ~ 133492 (-) True XLOC_028363
TCONS_00055093 mRNA downstream 15274 107287 ~ 119689 (-) True XLOC_028361
TCONS_00055092 mRNA downstream 70260 57034 ~ 64703 (-) True XLOC_028357
TCONS_00055090 mRNA downstream 81593 48519 ~ 53370 (-) False XLOC_028356
TCONS_00055091 mRNA downstream 81593 49992 ~ 53370 (-) True XLOC_028356
TCONS_00055096 mRNA upstream 13749 151506 ~ 178510 (-) False XLOC_028365
TCONS_00055097 mRNA upstream 14300 152057 ~ 170120 (-) True XLOC_028365
TCONS_00055099 mRNA upstream 47106 184863 ~ 191736 (-) False XLOC_028366
TCONS_00055098 mRNA upstream 47106 184863 ~ 191736 (-) False XLOC_028366
TCONS_00055100 mRNA upstream 47106 184863 ~ 193762 (-) True XLOC_028366
TCONS_00055111 other upstream 545295 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 666390 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 799472 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1922767 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 2537349 2675106 ~ 2686090 (-) False XLOC_028423

Expression Profile

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