RNA id: TU2372017


Basic Information

Item Value
RNA id TU2372017
length 292
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G2074504
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 32198648 ~ 32198939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGGATTTTTGATGATAtttacattgatgtcagagtgattggAGGGAGAATAGaatgctgagtaccaggcagttagcaagtttggcaggctactaatgaccatcagcagcatcagagcttggagaagcctaattaccgtttCTAAACGGTCATGTgtaatttgactgccttcatgactcgtgatcGCCGGTGTGGCATTACTACTGCAACAGCCCTATGTCATGACgctggcctggggggtaggtttatgacagtcataaataacttcccccccttttcctctctctaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2372012 lncRNA upstream 6491 32191828 ~ 32192157 (+) True G2074499
TU2372011 lncRNA upstream 7686 32190751 ~ 32190962 (+) True G2074498
TU2372010 lncRNA upstream 9149 32189296 ~ 32189499 (+) True G2074497
TU2372009 lncRNA upstream 9405 32189012 ~ 32189243 (+) True G2074496
TU2372005 lncRNA upstream 18888 32179556 ~ 32179760 (+) True G2074492
TU2372018 lncRNA downstream 177 32199116 ~ 32199546 (+) True G2074505
TU2372019 lncRNA downstream 735 32199674 ~ 32199873 (+) True G2074506
TU2372021 lncRNA downstream 2459 32201398 ~ 32201632 (+) True G2074508
TU2372023 lncRNA downstream 4969 32203908 ~ 32204136 (+) True G2074510
TU2372028 lncRNA downstream 11258 32210197 ~ 32210456 (+) True G2074515
XR_005040061.1 mRNA upstream 326941 31870740 ~ 31871707 (+) True LOC118944767
XM_021588374.2 mRNA upstream 330348 31853996 ~ 31868300 (+) False LOC110507951
XM_021588375.2 mRNA upstream 427883 31748676 ~ 31770765 (+) True efhd1
trnag-ucc-233 mRNA upstream 450296 31748281 ~ 31748352 (+) True trnag-ucc-233
trnaw-cca-60 mRNA upstream 451435 31747142 ~ 31747213 (+) True trnaw-cca-60
XM_036965862.1 mRNA downstream 71267 32270206 ~ 32478694 (+) False LOC110507983
XM_036965859.1 mRNA downstream 71267 32270206 ~ 32488659 (+) False LOC110507983
XM_036965860.1 mRNA downstream 71267 32270206 ~ 32488659 (+) False LOC110507983
XM_036965861.1 mRNA downstream 71267 32270206 ~ 32488659 (+) False LOC110507983
XM_021588412.2 mRNA downstream 329634 32528573 ~ 32591902 (+) False LOC110507985
TU2372015 other upstream 1444 32196813 ~ 32197204 (+) True G2074502
TU2371728 other upstream 222147 31968537 ~ 31976501 (+) True G2074227
TU2371726 other upstream 224583 31966018 ~ 31974065 (+) True G2074226
TU2369780 other upstream 1926651 30270111 ~ 30271997 (+) False G2072515
TU2369781 other upstream 1927030 30270111 ~ 30271618 (+) True G2072515
TU2372090 other downstream 113051 32311990 ~ 32312276 (+) True G2074577
TU2371979 other downstream 249129 32448068 ~ 32448464 (+) False LOC110507983
TU2372178 other downstream 265299 32464238 ~ 32464876 (+) True G2074650
TU2372396 other downstream 329958 32528897 ~ 32588772 (+) False LOC110507985
TU2372519 other downstream 424685 32623624 ~ 32623968 (+) True G2074973

Expression Profile