RNA id: TU2373079


Basic Information

Item Value
RNA id TU2373079
length 1591
lncRNA type intronic
GC content 0.42
exon number 2
gene id G2075479
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 33467595 ~ 33472335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatagctccacattgatctggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatctagtactggtactctctgtatatagctccacattgatctggtactgggactctctgtatatagctccacattgatctggtactccctgtatatagctccacattgatctggtactccctgtatatagctccacattgatcaggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatctagtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatctggtactgggactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatctggtactgggactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatctggtactgggactctctgtatatagctccacattgatctggtactgggactctctgtatatagctccacattgatctggtactgggactctctgtatatagctccacattgatcaggtactggtactctctgtatatagctccacattgatctggtactgggactctctgtatatagctccacattgatcaggtactggtactctctgtatatagctccacattgatcaggtactggtactctctgtatataactccacattgatatggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatataactccacattgatcaggtactggtactctctgtatatagctccacattgatcaggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatataactccacattgatcaggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatcaggtactggtactctctgtatatagatccacattgatcaggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatcaggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagctccacattgatcaggtactggtactctctgtatatagctccacattgatcaggtactggtactctctgtatatagctccacattgatctggtactggtactctctgtatatagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2373065 lncRNA upstream 24478 33442641 ~ 33443117 (+) True G2075466
TU2373008 lncRNA upstream 34995 33348118 ~ 33432600 (+) True G2075409
TU2372956 lncRNA upstream 253024 33214353 ~ 33214571 (+) True G2075359
TU2372952 lncRNA upstream 259028 33208363 ~ 33208567 (+) True G2075355
TU2372942 lncRNA upstream 284738 33182554 ~ 33182857 (+) True G2075349
TU2373119 lncRNA downstream 52220 33521633 ~ 33521876 (+) True G2075511
TU2373123 lncRNA downstream 58264 33527677 ~ 33527947 (+) True G2075515
TU2373124 lncRNA downstream 59257 33528670 ~ 33528877 (+) True G2075516
TU2373170 lncRNA downstream 131185 33600598 ~ 33601145 (+) True G2075558
TU2373178 lncRNA downstream 140499 33609912 ~ 33610341 (+) True G2075566
XM_021588436.2 mRNA upstream 271782 33184578 ~ 33195813 (+) False LOC110507999
XM_021588433.2 mRNA upstream 271782 33184579 ~ 33195813 (+) False LOC110507999
XM_021588435.2 mRNA upstream 271782 33184579 ~ 33195813 (+) False LOC110507999
XM_021588432.2 mRNA upstream 271782 33184581 ~ 33195813 (+) True LOC110507999
XM_021588431.2 mRNA upstream 286205 33158868 ~ 33181390 (+) True LOC110507998
XM_036964911.1 mRNA downstream 113466 33582879 ~ 33935721 (+) False robo1
XM_036964908.1 mRNA downstream 113469 33582882 ~ 33935721 (+) False robo1
XM_036964910.1 mRNA downstream 152519 33621932 ~ 33935721 (+) False robo1
LOC110507198 mRNA downstream 1292205 34761618 ~ 34766144 (+) True LOC110507198
XM_021587092.2 mRNA downstream 1352208 34821621 ~ 34827171 (+) False LOC110507199
TU2372789 other upstream 477367 32988501 ~ 32990228 (+) True G2075208
TU2372519 other upstream 843627 32623624 ~ 32623968 (+) True G2074973
TU2372396 other upstream 878823 32528897 ~ 32588772 (+) False LOC110507985
TU2372178 other upstream 1002719 32464238 ~ 32464876 (+) True G2074650
TU2371979 other upstream 1019131 32448068 ~ 32448464 (+) False LOC110507983
TU2373116 other downstream 46828 33516241 ~ 33521004 (+) True G2075508
TU2373306 other downstream 348119 33817532 ~ 33817988 (+) True G2075687
TU2373344 other downstream 429864 33899277 ~ 33899623 (+) True G2075724
TU2373037 other downstream 447335 33916748 ~ 33934901 (+) False robo1
TU2373636 other downstream 1032836 34502249 ~ 34502705 (+) True G2076000

Expression Profile