RNA id: XM_021588432.2


Basic Information

Item Value
RNA id XM_021588432.2
length 4157
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110507999
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 33184578 ~ 33195813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGAGGGTTGAGGCAGAGAACCTCGAGGCAACACAGAGCGACAAATTCTTGACGTTCGCCCGCCTCCCCTTCCCATCTTTCATCATCACTATACACAACAGCGCAGCATCAGTATTGCCTGGGAATCCAGATAAACGACCCCTCAATACGTGTGGAAATATGTAACAATAACGAGAATATATTTAATCGAAGACACACTGACAGCACAAAGCTGCTGTATAATACCATGGGTggccatgatgatgatgatgatatgtcTTATCATGTAGCCAACAACCATCATCAAGATGAAGTGCTAAAAAACAAATTGAATGACAGTGGCCTTTGGAGTGACCAAGAATCCACTGGCGGCAACAATGCTAAGTGGGTCAAGGAGGGCCAGAACCAGCTGAGGAAAGTTGCTGAGAAACATCAGGACCAGAATGGGAACCAAGAGGACTTCTCCCCTCATAACACCActgaggaggagcagaggaacgAGGAGCAGACCAAATCTCCCAAGACCATCCTCAAGGAGCCAGTACTCATTGATACTCTACTGTCTGCCGAGGATAAAGAGGGTGAGGTCGAAGAAAATGACAAAGAAAAGGAAGATCCATCTGAGGCAGATGAAGAGGCCTGCAGTtttaaagaggaagagagggagtccGAACAGAGTAATGTGGAGgctgaaagagagggaggtggggtggCTAGAAATCCCTGTCTGCTGTTTTCTAACGTGAATGGAACACCAAGTGATGAAGAAACCAACTGGCCTGCACTGTCTCAGGAAAGCACTGCTGATATCCCTCCAAATGGAAACAAAGAGTCCTTCTGGGACTCGGAGGCCTTTGAGGCGGACACAGACCTACCCTCTGGGTGGATGCGGGTTCGAGACACCTCAGGCACCTACTACTGGCACATCCCTACTGGCACTACTCAGTGGGAGCCCCCCTCCCCTCTGGACAAGGTGGGAGACTCGATGATGTCCTCCAGTATGTCCCTGGAGACAACACCCTGTGAGGAAGAGCAGGAGGAAACATGGGGAGACCTCTCTAACCCAGATGAAGGGACTAGTGATGGAGAGTTGTGGAAGGAGGGAGAGGTGGCTTCTGATCAGAGCCTGAAGGAGTTTGAAGGGGCAACCCTGCGCTATGCATCCATCAACCTGAACTGTTCCCAATCTGAGGAAGAGGAGAACCTTGATCCCCATGGCACTGACTTGGAGGCTAAGTATTTTGCTGTGCGCTCTCTGGGCTGGGTGGAGATGTCTGAAGAGGACATGGCACCAGCGAAGAGCAGCGTGGCTGTCAACAACTGCATTAGACAGCTGTCCTACCATAAACACAACCTCCACGACACTGCTGGCATCTGGGGAGAGGGTAAGGACATGCTGATGGTCCTGGAGAATGACACTATGAATCTGATCGACCCGCTAGGCCAGACTCTGCTGCACTCCCAGCCTATTGGCAGCATCCGCGTGTGGGGTGTGGGCCGAGACAACGGCAGGGAAAGAGACTTTGCTTATGTAGCACGAGACAACCTGACCCAGGTACTCAAGTGTCACGTGTTCCGCTGTGACTCACCTGCCAAGAACATCGCCACCAGTCTGCATGAGATGTGCTCCAGGATAATGACAGAGAGGAAACTATCCAAGCCATTTCTGAGCAGGTACAATTCTGACCAGTGCAAAGCCATGGAGATTCCTACTCAAGAGTTTCCCGTTCCAAAAAATGAGAATTTCCAACGTTTCCTTGTATATTACCTTGGTAACGTACCTGTGACCAAGCCTGTAGGTAAGGGACGCATGGGTGTGGACACAATCAATGATGCTTTGGAGGCTGCAATGAACAGCACAAGGAAGCAGGATTGGACCCCCGTCTCTGTCAACGTGGCCCCTGCCACTCTCACCATCCTCACCAGAGAGACTGAGGAGGTGATGTCAGAATGCCGGGTGCGGTTCCTGTCTTTCATGGGTGTGGGAAAGGACATCCACACCTTTGCCTTCATCATGGCCAAGGGCCCCGGGGACTTCATCTGTCACATGTTCTGGTGTGAGCCCAACGCTGCCAGCCTGAGTGAGGCGGTGCAGGCCGCCTGCATGCTGCGCTACCAGAAGTGTCTGGACGCGAGGCCTCCCAGCCTGGGCTCCTGCTTGCCCACTCCGCCTGCTGACTCCATGGCCCGCCGGGTCAGGATGGGGGTCCAGAGTCTGCTGGGAAGCTTCAAGCAGTACAGGTCAGGGTCCCAGTCCCCCTGAGCAGAATAGAGAAGATCTCCTCCCCAGCAACACCAACCCATCACAGGAGCTCCAgctcactcctccactcctctttctctctcgctttctgccGTTTCTGTCGGCCTTACACTCCTTTTGGCCTTCCTTAGAGATAGTCCTTTCATTAGTGCATGGAGTTATATGTAACTgaggaaatgcttacttactagtgATTGCAAAGTGTTTTTCTATACATCTACTCTATAACTCTCCTTTAGCTTTGTACTCAAACTGAATGAGCCCTGACAACGGCCCATTGTTTGTTCTGTTGGGATTTAATCTGTTTGTCACTATTTTTGTGTTTTAGCAGAAACCATGTCTGGCAGGAAGCGTTCATATTATGGGATGTAACTACATGTTTCTTCACTGTAGGAAGCTAGGAGGATTCCACACAGAAATATATCTAATTTCTTTGCAACTATGGTTGAGTCATGGGGCCCTGCTCTTCCCCAAACAGTAACAGCAcctctttttaaaaatgttctacTGGTGTCTGAAGAAGGTCATGCAGTCACTGTCGAGCCTAGTAGAGTCTCCTGATGTTTGTTTTCTACCGTGTCATTACCCTGTACACTCCTCAGCCTCTACTCCTGTCCAACTGAGGCTCTAAGAGCCCAAGTAGAGGGTCACCTAGAGAGCTTCATGTTCCCCACTGCAAACAGTGTGTTTTAGTCTTCCATTAAAGAAGTGAATAATCATGTCACGTTGTTGTGAACAAACAGTGATttcagagtgtactgtagttgCGTTTCCCCTACATTTGCATGAACATTTGCAAGTTCAGTGCTTCTGTGCAATAATCAGACTTTCCTGTATGTGGTGTTGGTAGAATGGCTTCCAAACGGTTATATAGCAGCACACACTGTGCTGTGGGTTCTTTAATGTAGGGGCCTGGCTATATCTGACTAGGGCTTAGCCAACAAAAAGAGGCAATGGTGAAAATAGACTTCTGATCATGGAAAAGTGACTTAGAAAACACAACAGCTCAAGGCCTGAGTTTTCTGAGTCAGTCAACCGCAGCTggtaaccaccaccaccaaataGTAGTGTAGGACCTCACCACACACTGCATGTTTTAATAGCTCAGAGGAGTAACCTGGATCATATCTGCCTGCAGCGGTTTAGTGCTGAACTCTTAGTTATTGTAACATACTAGATGTGTGCTACTTCATGGTAAAGAGGGCTGAATTCTGTACCTGTTAAGTGTTTGTAAGGCATGTCACTAGCCTGTATCCGTGTCTATCAATATATAAGCTAGCTAGTAGTAGATTAGTTGTCACTGTCAGGTCCTTTCCACTGAGTAGCTGAGAGCAGGTCAGTATCTGTCTCCCTTAGTCAGCGCCCTGGGACAGGGATAACATTGAgagaatgattttatttatttcaatttttttgtacCACTTTTTGCTCTGTTTGGGCCATGGTCCCTCTAAgtaatgtattttgtattgttttcATACACTATAATGGACACTACTGAGGAGCAGTTGCACAGTTGCTCATTATTGATTGTATTAGAGAACAAATCAGACTAGTTGTggtttttatgtaaaaaaaaataataaaatacagaTGAAATGTGTTTGTCAGAAGTATTTAGTGCAATAGTTATTTGACTAACAAAATTAAACATGTAAAATATAGAAACACTATCTGATATAATTAGACTGGATTGAATTGTATAATACTATACTGTATCTCATGTCACTGTTCACTTATCATTGTGCTCCTTTTTCTAATTCTGTTATGTTAGTACTTCCAAAGTCAACATTAAAAATTAGGAATATTGGAACACTAGCTGATACATTTATTTCACAATTCATGTAAATTAGGTGTATAAAATGTATCTGTATATAAAAGTCCCTGCACAAGAAATAAATGTGAACATATCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2372942 lncRNA upstream 1724 33182554 ~ 33182857 (+) True G2075349
TU2372898 lncRNA upstream 50154 33131841 ~ 33134427 (+) False G2075308
TU2372899 lncRNA upstream 50154 33131841 ~ 33134427 (+) True G2075308
TU2372850 lncRNA upstream 89622 33094587 ~ 33094959 (+) True G2075261
TU2372814 lncRNA upstream 153145 33030717 ~ 33031436 (+) True G2075229
TU2372952 lncRNA downstream 12550 33208363 ~ 33208567 (+) True G2075355
TU2372956 lncRNA downstream 18540 33214353 ~ 33214571 (+) True G2075359
TU2373008 lncRNA downstream 152305 33348118 ~ 33432600 (+) True G2075409
TU2373065 lncRNA downstream 246828 33442641 ~ 33443117 (+) True G2075466
TU2373079 lncRNA downstream 271782 33467595 ~ 33469413 (+) False G2075479
XM_021588431.2 mRNA upstream 3191 33158868 ~ 33181390 (+) True LOC110507998
XM_036965526.1 mRNA upstream 72777 33105183 ~ 33111804 (+) True LOC110507993
XM_021588425.2 mRNA upstream 90758 33079794 ~ 33093823 (+) False vwa7
XM_036964909.1 mRNA downstream 195379 33391192 ~ 33935721 (+) False robo1
XM_036964911.1 mRNA downstream 387066 33582879 ~ 33935721 (+) False robo1
XM_036964908.1 mRNA downstream 387069 33582882 ~ 33935721 (+) False robo1
XM_036964910.1 mRNA downstream 426119 33621932 ~ 33935721 (+) False robo1
LOC110507198 mRNA downstream 1565805 34761618 ~ 34766144 (+) True LOC110507198
TU2372789 other upstream 194353 32988501 ~ 32990228 (+) True G2075208
TU2372519 other upstream 560613 32623624 ~ 32623968 (+) True G2074973
TU2372396 other upstream 595809 32528897 ~ 32588772 (+) False LOC110507985
TU2372178 other upstream 719705 32464238 ~ 32464876 (+) True G2074650
TU2371979 other upstream 736117 32448068 ~ 32448464 (+) False LOC110507983
TU2373116 other downstream 320428 33516241 ~ 33521004 (+) True G2075508
TU2373306 other downstream 621719 33817532 ~ 33817988 (+) True G2075687
TU2373344 other downstream 703464 33899277 ~ 33899623 (+) True G2075724
TU2373037 other downstream 720935 33916748 ~ 33934901 (+) False robo1
TU2373636 other downstream 1306436 34502249 ~ 34502705 (+) True G2076000

Expression Profile