RNA id: TU2372898


Basic Information

Item Value
RNA id TU2372898
length 2529
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G2075308
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 33131841 ~ 33134427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTTTGGTATTTACATTGCCAGTGAAGAGTTCCATTTCGATTGTCTGTGTGTAAAGCCTACAAGAGAGGTCAGGGGTGTTGGCTTGCATGTTAGGTGTACACACTACTAGACAAAGCATGTTCAATTTATTGAGACAGAGAGCAACAAGGTTCAGAGACGTGTGGCTTTACTGCCAGTGTCAACATTACAAAAGGTCCACAACACCCCCTCGTGGCCATCCTAACATTGAAGACGACATGAGAGGGCCATCAGAGGGAGGTTGTTCCTGAAATCCGGTCCTGCCGTTTCTGAAGCTGCATTTACCAGGGCTGAATCTGGGCCTTAGTCAAGAAGGGATGGTGGAGGGATGTTTCCCATAGCCTCAGAGTACAGCAGTCAGACTATACTAACCCACTGAGGTACGGAGGATACAGGTACAGAGCACAGACTTGAGAGCTGTTCTACAATGCCCCACATCAACCTGCTGCTGTgcatgagtacacacacacacacaaaaaggaaCACATGAATGATCGAAATGAACAACCTAAAGAAATATCAACATGTTTAAACTTGTtttatatagacacacacacacacacatttaatatATATAATTGAGACAATGTCTTCCAAAGTTTTGGAATAGGTGGACCAAAAGGGAACAACATATCAAGAACAAAGATAAATGAAATGTTCCATGAGTGAaggaatctttttttttttttaaaggcaaaaATGAAATGTCACAGCACTTAGCTGTGGCCCACAATGGTTGTTTCACCTGTGACCACTTCTCTATATGCCTTACATGCATTCAAGACTGGTGCATCATGTGAGGGTTCCGCTCCCGTCAAAATCTGTCTACGAGAGAATACAGCGATAAGCAGATTGACTACCCTCCCGCCTTTGGGACGACTCCCTTTGTTTGAGCAGAGACAAgaccatctcgtcattatatacagcaTCACACCAGAATtggagtcaattccatttcaatccaTGACTAACGCCGTTGACTTCctaaattgaccccaacccttgtTTACATGGTCCTACTCCGGCATACTGACAGATGACTTAGTCTGTGTCTTATATTACTTTAAAAATACAAACCACAACCTTCAATATCAACCTTGTGACGAGTCTAGCTTGGCCTCATCACAAATAATAATTGATCCATGATAAAAACGTTTTCATCCTTAAATATGGAAACGTTccaattatttaaaaaacaacagaTCTTTACATCAAAATAAAAAGTGAACAGATGATTCTAAAAAATTATTGACAGCTATTCTCCAGGATATTTCTGCTCAGAGGGAGTGACAGCTACTGGAAAAATGTGAATGGCTGTGTGGGGATCTGGACTGGGCTCCGGACAGGGGATTGGTCAGGCTGGCGCTGTGGTCACTCATTCTTTTCTCATGACCGTTCTAACCACCAGGGGAACAAGTCAATCCGCAAGGCTGCTGAAGCTACAACTCCACCACCTCTCTTTTCCCTTTAAAAGTCTCATCGACTGTGCTGTAGTGTCCTTTCTTCTCCTTGTTTAGCCGACATGCAGAATCCAAAGATATCCATGCAGATGCATAAACATAAAACTGATGTTGAAATTCAAATGGTTGTTCATACATTCTCTTCCACACACTCAAACCCATTCCTATACACAGTGCAAGCAGGGAAATGGCTACTCTTCAAGGTACACACTTCTTCTTTACCCCTCTCCCACTCCACTTTCCCTCTGTAGGAACAGTCCACACGACTTGTAACAGCAAGTTTCAGCAAGAGCACTTGTAAATTGCAGAAATATGGCTTTTAAAACCGTAACAATCAAAATAAAAACGAGTTTCAATATTTTTCgccctccccccaaaaatatttttcttcttctttcatGTGTTTCTACATTTGTttggattattttttattttttatccagtagtaaaaaaaacacatcTGCAGTGTATGGAAGGATTCATGTGTTGTttgtcagtgtttgtgtgtgttggataGGTGCCGCATGCGTTTGGCTGGTGGTGGAGTGGTATTTGCTGGCATAACCCAGGGATGGTAAAGTGTTGTCCATGTTTTGATGTgcccagtgtagtagtagtgtggagGGCAGACAGGTGGGGTCCTGCAGGCATGGCCAAGGGCAGCCCTGTCCTGTTCCACCTGGTCCCGTCAGAATGAGAGACAGGGCCGCCAGTCTATCCACACAGGCCTGCTGAGGTCAGTCATCACGTCATGCTCTAGGATCCATGTTTTCACCacttcctggtgtgtgtgtgtgtcttgtgcaagtgtttgtttgagtgtgtcagtttgtgtgcacgcacacacccatTTCCCCAGCAGTGCTAGTGTGTGAACATGTGGTAGCTTGCCTGCtcatgtgagtgtgtgagGTCAGTCCCGTATGCTGGTGGCAGAGTAAGAGAACTGAGGGAATTGTGTGCGAGAGAAGTCAGTCCCGTATGCTGGCGGAGTAAGAGAACTGAGGGAAGTGTGTGCGCTGGTCTTGGTCTTCTGCGTCTAAGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2372850 lncRNA upstream 36882 33094587 ~ 33094959 (+) True G2075261
TU2372814 lncRNA upstream 100405 33030717 ~ 33031436 (+) True G2075229
TU2372786 lncRNA upstream 101338 33003805 ~ 33030503 (+) False G2075207
TU2372813 lncRNA upstream 102535 33021682 ~ 33029306 (+) True G2075228
TU2372787 lncRNA upstream 124940 33003805 ~ 33006901 (+) True G2075207
TU2372942 lncRNA downstream 48127 33182554 ~ 33182857 (+) True G2075349
TU2372952 lncRNA downstream 73936 33208363 ~ 33208567 (+) True G2075355
TU2372956 lncRNA downstream 79926 33214353 ~ 33214571 (+) True G2075359
TU2373008 lncRNA downstream 213691 33348118 ~ 33432600 (+) True G2075409
TU2373065 lncRNA downstream 308214 33442641 ~ 33443117 (+) True G2075466
XM_036965526.1 mRNA upstream 20037 33105183 ~ 33111804 (+) True LOC110507993
XM_021588425.2 mRNA upstream 38018 33079794 ~ 33093823 (+) False vwa7
XM_036965489.1 mRNA upstream 38018 33079794 ~ 33093823 (+) False vwa7
XM_036965490.1 mRNA upstream 38018 33079801 ~ 33093823 (+) True vwa7
XM_036964849.1 mRNA upstream 168185 32943812 ~ 32963656 (+) False LOC110507986
XM_021588431.2 mRNA downstream 24441 33158868 ~ 33181390 (+) True LOC110507998
XM_021588436.2 mRNA downstream 50151 33184578 ~ 33195813 (+) False LOC110507999
XM_021588433.2 mRNA downstream 50152 33184579 ~ 33195813 (+) False LOC110507999
XM_021588435.2 mRNA downstream 50152 33184579 ~ 33195813 (+) False LOC110507999
XM_021588432.2 mRNA downstream 50154 33184581 ~ 33195813 (+) True LOC110507999
TU2372789 other upstream 141613 32988501 ~ 32990228 (+) True G2075208
TU2372519 other upstream 507873 32623624 ~ 32623968 (+) True G2074973
TU2372396 other upstream 543069 32528897 ~ 32588772 (+) False LOC110507985
TU2372178 other upstream 666965 32464238 ~ 32464876 (+) True G2074650
TU2371979 other upstream 683377 32448068 ~ 32448464 (+) False LOC110507983
TU2373116 other downstream 381814 33516241 ~ 33521004 (+) True G2075508
TU2373306 other downstream 683105 33817532 ~ 33817988 (+) True G2075687
TU2373344 other downstream 764850 33899277 ~ 33899623 (+) True G2075724
TU2373037 other downstream 782321 33916748 ~ 33934901 (+) False robo1
TU2373636 other downstream 1367822 34502249 ~ 34502705 (+) True G2076000

Expression Profile