RNA id: TU2372787



Basic Information


Item Value
RNA id TU2372787
length 365
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G2075207
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 33003805 ~ 33030503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcacactcttggcattctctcaaccagattcatgaggtagtcacctggaataattttcaatgaacaggtgtgccttgttaaaagttcatttgtggactttctttccttcttaatgcatttgagccaatcagttgtgttgtgacaaggtggggggtgcagtcacaaaaaaacatcaagcgctatgatgaaactggctctcatgaggaccaccacaggaatggaagacccagagttacttctgctgcagaggataagtgctcagcatatgtgagaagtccttcaagactgttggaaaagcattccaggtgaatctggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2372795 lncRNA upstream 19927 32983353 ~ 32983878 (+) True G2075210
TU2372839 lncRNA upstream 29107 32974474 ~ 32974698 (+) True G2075253
TU2372753 lncRNA upstream 125010 32878366 ~ 32878795 (+) True G2075179
TU2372711 lncRNA upstream 182937 32818690 ~ 32820868 (+) True G2075137
TU2372654 lncRNA upstream 261702 32741053 ~ 32742103 (+) True G2075084
TU2372813 lncRNA downstream 14781 33021682 ~ 33029306 (+) True G2075228
TU2372814 lncRNA downstream 23816 33030717 ~ 33031436 (+) True G2075229
TU2372850 lncRNA downstream 87686 33094587 ~ 33094959 (+) True G2075261
TU2372898 lncRNA downstream 124940 33131841 ~ 33134427 (+) False G2075308
TU2372899 lncRNA downstream 124940 33131841 ~ 33134427 (+) True G2075308
XM_036964849.1 mRNA upstream 40149 32943812 ~ 32963656 (+) False LOC110507986
XM_036964850.1 mRNA upstream 40149 32943813 ~ 32963656 (+) True LOC110507986
XM_036964851.1 mRNA upstream 40869 32943811 ~ 32962936 (+) False LOC110507986
XM_036964852.1 mRNA upstream 51942 32943807 ~ 32951863 (+) False LOC110507986
XM_021588412.2 mRNA upstream 411903 32528573 ~ 32591902 (+) False LOC110507985
XM_021588425.2 mRNA downstream 72893 33079794 ~ 33093823 (+) False vwa7
XM_036965489.1 mRNA downstream 72893 33079794 ~ 33093823 (+) False vwa7
XM_036965490.1 mRNA downstream 72900 33079801 ~ 33093823 (+) True vwa7
XM_036965526.1 mRNA downstream 98282 33105183 ~ 33111804 (+) True LOC110507993
XM_021588431.2 mRNA downstream 151967 33158868 ~ 33181390 (+) True LOC110507998
TU2372789 other upstream 13577 32988501 ~ 32990228 (+) True G2075208
TU2372519 other upstream 379837 32623624 ~ 32623968 (+) True G2074973
TU2372396 other upstream 415033 32528897 ~ 32588772 (+) False LOC110507985
TU2372178 other upstream 538929 32464238 ~ 32464876 (+) True G2074650
TU2371979 other upstream 555341 32448068 ~ 32448464 (+) False LOC110507983
TU2373116 other downstream 509340 33516241 ~ 33521004 (+) True G2075508
TU2373306 other downstream 810631 33817532 ~ 33817988 (+) True G2075687
TU2373344 other downstream 892376 33899277 ~ 33899623 (+) True G2075724
TU2373037 other downstream 909847 33916748 ~ 33934901 (+) False robo1
TU2373636 other downstream 1495348 34502249 ~ 34502705 (+) True G2076000

Expression Profile