RNA id: TCONS_00055231


Basic Information

Item Value
RNA id TCONS_00055231
length 1037
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_028456
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4752622 ~ 4756349 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGAACCGGAACTGACGTTATATGTTTCTTTTGCTCCTGGGGAATGTTTATGAAGACGCACCGGAAACAGCGTGGGGTTATTGCAGCCTTCTCAAGATCTACTGGATTTTCTGGATGACATATCGGTAAACATTATAGCACCATCGACGCAGCAGAGATGTTGAGAAACGCCTCCGCACAGATACTGAAACAGTTTGTCCGTCATAGGACCACAGACGCAAGTCTGACCTTGGAGAAATctattaacAAGGTGCAGATTCTTGGGCGAGTCGGGCAAGACCCCGTCATGAGGCAGGTGGAGGGCAGAAACCCCGTCACCATCTTTTCTATGGCTACAAACGAAATGTGGCGGTCCGGGGAGGGAGAGCCAGTTGGCGCAGGAGACGTCACTCAGAAAACAACATGGCACAGAATTTCTGTATTCAAACCAGGCCTCAGAGACGTGGCGTATCAGTATGTAAAGAAAGGGTCTAGGATTTTTGTGGAAGGAAAGCTCGATTATGGAGAGTATGTTGATAAAAACAATGTCAGACGACAGGCAACAACTATTATCGCAGATAATATTGTGTTTCTAAGTGAAAACCTGCGGGACCAGTAGTGAAGATGCCTTTCTGGACATATAGAGTCAAAGGACAATATTTTGTATAGTGTAACTCTGCTTATCTACATTAAACTCTGAGTATATTTGTGTCTGCCATTAGCTGTCATGCATAAAAtaacagtaattttttttgttatgattGTGTCATGCTCTCTTATTTCATACAGAGGGCGCCAGAAGATGCACTTTTTGACATGTGAACACCTTTGAGGCCCCTTTAAGTTAATTGGACTGTTTTTGTAgaagaaactatatatatataatccgtTTTTTActtctaaaacattaaatatatacgCATAGAGCCACGTCCAGTTTGTTGTGCTACCATGCTTATGTTCATGAGTAAATGTAGCAGTTTTGTCAGTAAAGGGTTTGTTATTAATACTCACACCATCTCCAAAGTTTGTGACTTCAAATATACAACACTTGCAG

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006264 mitochondrial DNA replication biological_process
GO:0051096 positive regulation of helicase activity biological_process
GO:0009295 nucleoid cellular_component
GO:0042645 mitochondrial nucleoid cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003677 DNA binding molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-340 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in mitochondrial DNA replication and positive regulation of helicase activity. Predicted to act upstream of or within DNA replication. Predicted to be active in mitochondrial nucleoid. Human ortholog(s) of this gene implicated in optic atrophy. Orthologous to human SSBP1 (single stranded DNA binding protein 1).

Ensembl:

ensembl_id ENSDART00000057507

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055221 lncRNA downstream 236114 4514438 ~ 4516508 (-) True XLOC_028450
TCONS_00055216 lncRNA downstream 377918 4321168 ~ 4374704 (-) True XLOC_028446
TCONS_00055214 lncRNA downstream 496347 4238000 ~ 4256275 (-) False XLOC_028445
TCONS_00055208 lncRNA downstream 523467 4224273 ~ 4229155 (-) True XLOC_028443
TCONS_00058005 lncRNA downstream 523554 4220148 ~ 4229068 (-) False XLOC_028443
TCONS_00058006 lncRNA upstream 184118 4940467 ~ 4962892 (-) False XLOC_028461
TCONS_00057318 lncRNA upstream 199603 4955952 ~ 4961841 (-) True XLOC_028461
TCONS_00058009 lncRNA upstream 206608 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058011 lncRNA upstream 206608 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058013 lncRNA upstream 206608 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00055229 mRNA downstream 639 4712410 ~ 4751983 (-) False XLOC_028455
TCONS_00055228 mRNA downstream 639 4712410 ~ 4751983 (-) False XLOC_028455
TCONS_00055230 mRNA downstream 641 4751663 ~ 4751981 (-) True XLOC_028455
TCONS_00055227 mRNA downstream 45729 4626794 ~ 4706893 (-) True XLOC_028454
TCONS_00055226 mRNA downstream 140506 4601815 ~ 4612116 (-) True XLOC_028453
TCONS_00055233 mRNA upstream 1652 4758001 ~ 4780667 (-) False XLOC_028457
TCONS_00055234 mRNA upstream 2115 4758464 ~ 4780510 (-) True XLOC_028457
TCONS_00055235 mRNA upstream 26372 4782721 ~ 4795205 (-) True XLOC_028458
TCONS_00055236 mRNA upstream 75795 4832144 ~ 4834617 (-) False XLOC_028459
TCONS_00055237 mRNA upstream 75801 4832150 ~ 4834347 (-) True XLOC_028459
TCONS_00055225 other downstream 181817 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 255831 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 2066532 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2589898 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 3803780 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055239 other upstream 174062 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 613707 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 1680415 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 1809304 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 2428846 7185195 ~ 7185311 (-) True XLOC_028494

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_01453501_01454593.mRNA True 751 mRNA 0.42 4 CI01000066 1453501 ~ 1454967 (+)