RNA id: TCONS_00055227


Basic Information

Item Value
RNA id TCONS_00055227
length 2199
RNA type mRNA
GC content 0.55
exon number 22
gene id XLOC_028454
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4626794 ~ 4706893 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGGACCCCCTAGCCGACATGCGAGCGTCTCGGGCGGAGCGCAGCGGCAGAGGAGCCGCCGGTGGGGAATCGGCGGAAGATCAGACGCGCGGCTGCGGGAAAAACGCGGCGATGGGCGGCAGCGACAGCTTGAGCAGCTTCGCCGACATGGATGACTCGCTGGAGGATAAACTCAAAGGTCTGGCGttcaggaagcagatctcctaTAGGAAAGCCATCTCGCGCTCGGGCCTCCAGCATTTGGGTCCGGCCCAGAATCCCTTCCCTGCCTTGAGCAACGGACCAGCCAAGGAGCTCCGCAACACCGTGGACTGGAGTgAAAACGCAGTGAACGGTGATCATCTGTGGCTGGAGACCAACTGCTCCGGTGAACTCTGCTACCTGGGTGAAGAAACCTGTGTGGCCAAGATCGCAAAGTCTGCTCCCCGGAGGAAGTGTGCGGCCTGTAAGATCGTGGTTCACACCGCCTGCATCGAGGAGCTGGACAAGATCAACTTCCGCTGTAAACCCACTTTCAGAGAGGGCAGCTCTCGATGCCTCAGAGACAATGTGTTGCGGCACCACTGGGTTCATCGTCGCCGACAGGAGGGAAAATGTCGACAGTGCGGCAAAAGTTTTCCACAGAAGTTCTTCCACAGTAAGGAGATCGTGGCCATCAGCTGCTCCTGGTGCAAACAGGCGTTCCACAACAAGGTGACGTGTTTCATGCTGCATCAGATTGAGGAGCCCTGTTCACTGGGAGCTCACGCCGGGGTCATTGTCCCACCATCCTGGATTATTAAAGTCCGGAAACCGCAGAGCTCATTTAAAAACTCCACTCGGAGGAAAAAACGGACGTCGTTCAAAAGAAGAGCCAGCAAAAAGGGCACGGATGAATCTAAATGGCGTCCATTCATGCTGAAGCCGCTGCCGTCACCGCTGATGAAACCAGTGCTGGTGTTCGTCAACCCGAAAAGTGGAGGAAACCAGGGCACGAAGCTCCTGCAGATGTTCATGTGGATCCTGAACCCTCGGCAGGTGTTTGATTTGTCTCAGGGAGGCCCCAGAGATGCGTTGGAGTTGTACAGGAAAGTGCCAAATCTTCGCATCCTGGCCTGTGGAGGAGATGGAACCGTGGGCTGGATTCTGTCGGCTTTAGATGAGCTTCAGATGAACCCTCAGCCTCCTGTGGCGGTACTTCCTCTTGGAACAGGAAATGACCTTGCTAGGACACTCAACTGGGGAGGTGGCTACACAGACGAGCCGGTGTCGAAGGTGTTGTGTCATGTGGAGGACGGCTCTGTGGTCCAGCTGGACCGCTGGAATCTGCAGGTGGAGCGCTCAGTGGTCCAGCACGAGGAGGGAACACAGAAGCTTCCTTTAAATGTGTTCAATAACTACTTCAGCCTCGGTTTCGATGCCCACGTCACCCTGGAGTTTCACGAGTCCAGAGAAGCAAACCCAGAGAAATTCAACAGTCGCTTCCGTAACAAGATGTTCTATGCAGGGGCTGCGTTCTCAGACTTCCTCCAGAGGAGCTCCAGGGATCTGTCTAAGCATGTCCGAGTTGTGTGTGACGGCACCGATCTCACAGCCAAGATCCAGGAGCTCAAGTTTCAGTGCATCGTCTTCTTGAATATTCCCAGATACTGTGCTGGAACAATGCCATGGGGAAACACAGGAGACCACCGAGACTTTGAGCCACAGCGACATGATGATGGCTGCATCGAGGTCATCGGCTTCACCATGGCCTCTCTGGCGGCGCTGCAGGTTGGTGGTCATGGGGATCGTCTCCATCAGTGTCGAGAGGTGCTCATCACCACCTTCAAGACTCTGCCAGTGCAGGTAGATGGAGAGCCGTGCCGTCTGGCGCCCTCCACCCTGCGCATCTCTCTGAGGAACCAGGCCAACATGGTGCAGAAGAGCAAGAGACGCACATCTGTACCGCTGCTCAATGACCCTCACGCCGTTCCAGAGCGCCTGCGTCTGCGTGTCAACCGCATCGGTCTGCAGGACTACGACAGCATGCAGTTCGATAAGGAACGTCTGCGCGACATCTcgaCTGCTGTTGGCATCGTGGTGGTGAGAGGAGACTGTGACCTCGAAACCTGTCGACTCTACATTGATAGACTGCAGGAGGTGAGCACTTCCCATCATGCACCTGTATGTCTTATTTTACTGAGGCCTGTTAAGTCAGCGAGTGAATGTTGCACATAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120327-1 Orthologous to human DGKI (diacylglycerol kinase iota).

Ensembl:

ensembl_id ENSDART00000093005

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00055221 lncRNA downstream 110286 4514438 ~ 4516508 (-) True XLOC_028450
TCONS_00055216 lncRNA downstream 252090 4321168 ~ 4374704 (-) True XLOC_028446
TCONS_00055214 lncRNA downstream 370519 4238000 ~ 4256275 (-) False XLOC_028445
TCONS_00055208 lncRNA downstream 397639 4224273 ~ 4229155 (-) True XLOC_028443
TCONS_00058005 lncRNA downstream 397726 4220148 ~ 4229068 (-) False XLOC_028443
TCONS_00058006 lncRNA upstream 233574 4940467 ~ 4962892 (-) False XLOC_028461
TCONS_00057318 lncRNA upstream 249059 4955952 ~ 4961841 (-) True XLOC_028461
TCONS_00058009 lncRNA upstream 256064 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058011 lncRNA upstream 256064 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00058013 lncRNA upstream 256064 4962957 ~ 4966824 (-) False XLOC_028462
TCONS_00055226 mRNA downstream 14678 4601815 ~ 4612116 (-) True XLOC_028453
TCONS_00055223 mRNA downstream 34507 4540223 ~ 4592287 (-) False XLOC_028452
TCONS_00055224 mRNA downstream 56319 4540518 ~ 4570475 (-) False XLOC_028452
TCONS_00055222 mRNA downstream 91605 4526248 ~ 4535189 (-) True XLOC_028451
TCONS_00055219 mRNA downstream 119033 4484651 ~ 4507761 (-) False XLOC_028449
TCONS_00055229 mRNA upstream 5517 4712410 ~ 4751983 (-) False XLOC_028455
TCONS_00055228 mRNA upstream 5517 4712410 ~ 4751983 (-) False XLOC_028455
TCONS_00055230 mRNA upstream 44770 4751663 ~ 4751981 (-) True XLOC_028455
TCONS_00055231 mRNA upstream 45729 4752622 ~ 4756349 (-) False XLOC_028456
TCONS_00055232 mRNA upstream 46167 4753060 ~ 4755622 (-) True XLOC_028456
TCONS_00055225 other downstream 55989 4546209 ~ 4570805 (-) True XLOC_028452
TCONS_00055220 other downstream 130003 4492566 ~ 4496791 (-) True XLOC_028449
TCONS_00055185 other downstream 1940704 2675106 ~ 2686090 (-) False XLOC_028423
TCONS_00055166 other downstream 2464070 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055131 other downstream 3677952 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055239 other upstream 223518 4930411 ~ 4932524 (-) True XLOC_028460
TCONS_00055263 other upstream 663163 5370056 ~ 5371622 (-) True XLOC_028470
TCONS_00055293 other upstream 1729871 6436764 ~ 6451732 (-) False XLOC_028490
TCONS_00055295 other upstream 1858760 6565653 ~ 6567266 (-) True XLOC_028490
TCONS_00055299 other upstream 2478302 7185195 ~ 7185311 (-) True XLOC_028494

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000066_01479854_01525318.mRNA True 2898 mRNA 0.56 32 CI01000066 1479854 ~ 1525318 (+)