RNA id: TU2380578


Basic Information

Item Value
RNA id TU2380578
length 1962
RNA type TUCP
GC content 0.49
exon number 1
gene id G2081949
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 39931874 ~ 39933835 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aactctacctatatgtacgtattacctcaactaaccggtgccactgcacattgactctgaaccattacaccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgaaccgttacaccctgtatatagcctccacattgactctgaaccgttacaccctgtatatagcctccacattgactctgaaccgttacaccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgaaccgttacaccctgtatatagcctccacattgactctgaaccgttacaccttgtatatagcctccacattgactctgaaccgttacaccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgaaccgttacaccctgtatatagcctccacattgactctgaaccgttacaccctgtatatagcctccacattgactctgaaccggtacaccctgtatatagcctccacattgactctgaaccattacaccctctatataccctccacattgactctgtaccggtacaccctgtatatagccttcacattgactctgaaccgttacaccctgtatatagcctccacattgactctgaaccgttacaccctgtatatagccttcacattgactctgaaccgttacaccctgtatatagcctccatattgactctgaaccgttacaccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacactgactctgtaccggtaccccctgtatataacctccacattgactctgtacctgtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacactgactcggtaccagtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatggcctccacattaactctgtaccggtaccccctgtatatagcctccacattaactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgttacaccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccttgtatatggcctccacattaactctgtaccggtaccccctgtatatagcctccacattaactctgtaccggtaccccctgtatatagcctccacattgactctgtaccgttacaccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgcatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtactggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgcatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtacaccctgtatatagcctccacattgactctctaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatataacctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagccttgctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2380572 lncRNA upstream 8157 39923502 ~ 39923717 (+) True G2081943
TU2380571 lncRNA upstream 9824 39921825 ~ 39922050 (+) True G2081942
TU2380555 lncRNA upstream 44321 39886726 ~ 39887553 (+) True G2081926
TU2380538 lncRNA upstream 69221 39858460 ~ 39862653 (+) True G2081909
TU2380468 lncRNA upstream 109353 39776162 ~ 39822521 (+) True G2081845
TU2380474 lncRNA downstream 3246 39937081 ~ 39937294 (+) True LOC110507223
TU2380579 lncRNA downstream 6239 39940074 ~ 39940355 (+) True G2081950
TU2380811 lncRNA downstream 11769 39945604 ~ 39945812 (+) True G2082145
TU2380813 lncRNA downstream 12017 39945852 ~ 39946484 (+) True G2082147
TU2380829 lncRNA downstream 25029 39958864 ~ 39959203 (+) True G2082163
XM_036964981.1 mRNA upstream 230662 39694561 ~ 39701212 (+) True LOC110507222
XM_036965220.1 mRNA upstream 250314 39667989 ~ 39681560 (+) False LOC110508028
XM_036965219.1 mRNA upstream 251742 39668004 ~ 39680132 (+) True LOC110508028
XR_005040116.1 mRNA upstream 892249 39039573 ~ 39039625 (+) True LOC118944799
XM_021588440.2 mRNA upstream 1303704 38619550 ~ 38628170 (+) True LOC110508002
XM_021586905.2 mRNA downstream 360996 40294831 ~ 40297552 (+) False ssr3
NM_001160569.1 mRNA downstream 361005 40294840 ~ 40297545 (+) True ssr3
XM_036965107.1 mRNA downstream 727411 40661246 ~ 40670079 (+) False LOC110508037
XM_036965110.1 mRNA downstream 727477 40661312 ~ 40670079 (+) False LOC110508037
XM_036965108.1 mRNA downstream 727480 40661315 ~ 40670079 (+) False LOC110508037
TU2380477 other upstream 18796 39895667 ~ 39913078 (+) False LOC110507223
TU2380510 other upstream 94491 39827658 ~ 39837383 (+) True G2081884
TU2378436 other upstream 1986723 37944932 ~ 37945151 (+) True G2080014
TU2377942 other upstream 2112588 37815878 ~ 37819286 (+) False G2079657
TU2377944 other upstream 2112588 37815878 ~ 37819286 (+) True G2079657
TU2380828 other downstream 23380 39957215 ~ 39957751 (+) True G2082162
TU2381755 other downstream 909679 40843514 ~ 40844780 (+) False LOC110508042
TU2381759 other downstream 910994 40844829 ~ 40846039 (+) False LOC110508042
TU2381889 other downstream 1047535 40981370 ~ 40984854 (+) True G2083005
TU2382143 other downstream 1278369 41212204 ~ 41212772 (+) True G2083239

Expression Profile