RNA id: TU2382303


Basic Information

Item Value
RNA id TU2382303
length 245
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2083384
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41344295 ~ 41344539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTAAAAGGCGTATTGTAGGCTGTCTAGTGCACTGCTCTACAATGTGTCTTGGACTGAATCCATGTCAGTCATTTAACATGAGGTTTGTAATAATTCCCCGGGGGGATATGTCACCATTGTGGAGTGTCTGTGACCTGCAGTATTctactgtctgttgtcatggttacCGTAGCGTCAACGACACAGCACCCAGCCATATTGGCCACAGATGTCCGTTTTCAGTCACATACATTGTCAATGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2382301 lncRNA upstream 919 41342987 ~ 41343376 (+) True G2083382
TU2382286 lncRNA upstream 4849 41338980 ~ 41339446 (+) True G2083371
TU2382285 lncRNA upstream 6273 41333773 ~ 41338022 (+) True G2083370
TU2382273 lncRNA upstream 20255 41323827 ~ 41324040 (+) True G2083358
TU2382266 lncRNA upstream 23646 41320406 ~ 41320649 (+) True G2083351
TU2382318 lncRNA downstream 18023 41362562 ~ 41366592 (+) True G2083398
TU2382326 lncRNA downstream 46835 41391374 ~ 41393183 (+) True G2083403
TU2382396 lncRNA downstream 98213 41442752 ~ 41443094 (+) True G2083466
TU2382401 lncRNA downstream 101341 41445880 ~ 41446525 (+) True G2083471
TU2382407 lncRNA downstream 104763 41449302 ~ 41449680 (+) True G2083477
XM_021588498.2 mRNA upstream 140600 41194800 ~ 41203695 (+) True LOC110508050
XM_036965615.1 mRNA upstream 158831 41180486 ~ 41185464 (+) True LOC110508049
XM_021587121.2 mRNA upstream 175811 41163243 ~ 41168484 (+) True LOC110507231
XM_021588491.2 mRNA upstream 347727 40992078 ~ 40996568 (+) True LOC110508044
LOC118944684 mRNA upstream 436982 40904514 ~ 40907313 (+) True LOC118944684
XM_036965039.1 mRNA downstream 140650 41485189 ~ 41506611 (+) False LOC110507232
XM_036965019.1 mRNA downstream 176907 41521446 ~ 41571922 (+) True dhx36
LOC118944685 mRNA downstream 434382 41778921 ~ 41781836 (+) True LOC118944685
XM_021587167.2 mRNA downstream 886819 42231358 ~ 42242002 (+) True LOC110507284
XM_036965239.1 mRNA downstream 1054150 42398689 ~ 42416136 (+) True LOC110507235
TU2382143 other upstream 131523 41212204 ~ 41212772 (+) True G2083239
TU2381889 other upstream 359441 40981370 ~ 40984854 (+) True G2083005
TU2381759 other upstream 498256 40844829 ~ 40846039 (+) False LOC110508042
TU2381755 other upstream 499515 40843514 ~ 40844780 (+) False LOC110508042
TU2380828 other upstream 1386544 39957215 ~ 39957751 (+) True G2082162
TU2382447 other downstream 161820 41506359 ~ 41507173 (+) True LOC110507232
TU2382880 other downstream 626720 41971259 ~ 42112036 (+) False G2083851
TU2382881 other downstream 628289 41972828 ~ 42012992 (+) True G2083851
TU2383238 other downstream 915984 42260523 ~ 42261637 (+) True G2084156
TU2383825 other downstream 1718749 43063288 ~ 43064257 (+) True G2084659

Expression Profile