RNA id: TU2385572


Basic Information

Item Value
RNA id TU2385572
length 306
lncRNA type intronic
GC content 0.46
exon number 2
gene id G2086017
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44513822 ~ 44514178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctataggacctgccttgttgacagtgttgttaagaaggtagaaactagggcctgtaggacctgccttgttgatagtgttgttaagaaggtagaaactagggcctgtaggacctgccttgttgatagtgttgttaagaaggtagaaactagggcctgtaggacctgccttgttgacagtgttgttaagaaggtagaaactagggcctgtaggacctgccttgttgacagtgttgttaagaaggtagaaactagggcctgtaggacctgccttgttgacagtgttgttaagaaggtagaaactagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2385558 lncRNA upstream 9653 44502386 ~ 44504169 (+) True G2086009
TU2385543 lncRNA upstream 36567 44476587 ~ 44477255 (+) True G2085995
TU2385534 lncRNA upstream 47319 44465556 ~ 44466503 (+) True G2085987
TU2385525 lncRNA upstream 66237 44446352 ~ 44447585 (+) True G2085979
TU2385524 lncRNA upstream 68794 44444572 ~ 44445028 (+) True G2085978
TU2385616 lncRNA downstream 65328 44579506 ~ 44580331 (+) True G2086055
TU2385621 lncRNA downstream 68902 44583080 ~ 44584325 (+) True G2086060
TU2385626 lncRNA downstream 70845 44585023 ~ 44586021 (+) True G2086062
TU2385628 lncRNA downstream 74011 44588189 ~ 44645563 (+) True G2086063
TU2385629 lncRNA downstream 74217 44588395 ~ 44589190 (+) True G2086064
XM_036965396.1 mRNA upstream 280999 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 411931 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 415786 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 423607 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 444237 44030564 ~ 44069585 (+) True LOC110508084
XM_036965371.1 mRNA downstream 353809 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA downstream 353809 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA downstream 353811 44867989 ~ 45360655 (+) False cadm2b
XM_036965702.1 mRNA downstream 929727 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 929728 45443906 ~ 45479066 (+) False usp16
TU2385505 other upstream 103772 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 394583 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 779928 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 981244 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 1449565 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 972459 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 1015278 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 1282921 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 1808906 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1979744 46493922 ~ 46496887 (+) False G2087592

Expression Profile