RNA id: TU2385616


Basic Information

Item Value
RNA id TU2385616
length 802
lncRNA type intronic
GC content 0.50
exon number 2
gene id G2086055
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44579506 ~ 44580331 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAGACATGAACTGTCCCGCTACATCTCTCTGACCATCCTTCCTCTGATCAAGACATGAACTGTCCCGCTACATCTCTCTGACCATCCTTCCTCTGATCAAGCCATGAACTGTCCCGCTACATCTTTCTGACCATCCTTCCTCTGATCAAGACGTGAACTGTCCCGCTACATCTCTCTGACCATCCTTCCTCTGACCAAGACATGAACTGTCCCGCTACATCTCTCTGACCATCCTTCCTCTGATCAAGACGTGAACTGTCCCGCTACATCTCTCTGACCATCCTTCCTCTGACCAAGACATGAACTGTCCCGCTACATCTCTCTGACCATCCTTCCTCTGACCAAGACATGAACTGTCCCGCTACATCTCTCTGACCATCCTTCCTCTGATCAAGCCATGAACTGTCCCGCTACATCTCTCTGACCATCCTTCCTCTGATCAAGACGTGAACTGTCCCGCTACATGTCTCTGACCATCCTTCCTCTGATCAAGACGTGAACTGTCCCGCTACATCTCTCTGACCATCCATCCTCTGATCAAGACATGAACTGTCCCGCTACATCTCTCTGACCATCCTTCCTCTGACCAAGACAtgaactgtccctctccatctctctgaccATACTTCCTCTGATCAAGACATGAACTGTCCCGCTACATCTCTCTGACCATCCTTCCTCTGATCAAGCCATGAACTGTCCCGCTACATCTCTCTGACCATCCATCCTCTGATCAAGACATGAACTGTCCCGCTACATCTCTCTGACCATCCTTCCTCTGATCAAGACATGAACTGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2385572 lncRNA upstream 65328 44513822 ~ 44514178 (+) True G2086017
TU2385558 lncRNA upstream 75337 44502386 ~ 44504169 (+) True G2086009
TU2385543 lncRNA upstream 102251 44476587 ~ 44477255 (+) True G2085995
TU2385534 lncRNA upstream 113003 44465556 ~ 44466503 (+) True G2085987
TU2385525 lncRNA upstream 131921 44446352 ~ 44447585 (+) True G2085979
TU2385621 lncRNA downstream 2749 44583080 ~ 44584325 (+) True G2086060
TU2385626 lncRNA downstream 4692 44585023 ~ 44586021 (+) True G2086062
TU2385628 lncRNA downstream 7858 44588189 ~ 44645563 (+) True G2086063
TU2385629 lncRNA downstream 8064 44588395 ~ 44589190 (+) True G2086064
TU2385635 lncRNA downstream 21373 44601704 ~ 44601988 (+) True G2086070
XM_036965396.1 mRNA upstream 346683 44111550 ~ 44232823 (+) True LOC110508097
LOC110507242 mRNA upstream 477615 44100049 ~ 44101891 (+) True LOC110507242
XM_036965492.1 mRNA upstream 481470 44095444 ~ 44098036 (+) True cldn8
XM_021588541.2 mRNA upstream 489291 44088591 ~ 44090215 (+) True zgc:110333
XM_036965739.1 mRNA upstream 509921 44030564 ~ 44069585 (+) True LOC110508084
XM_036965371.1 mRNA downstream 287656 44867987 ~ 45360655 (+) False cadm2b
XM_036965373.1 mRNA downstream 287656 44867987 ~ 45360655 (+) False cadm2b
XM_036965372.1 mRNA downstream 287658 44867989 ~ 45360655 (+) False cadm2b
XM_036965702.1 mRNA downstream 863574 45443905 ~ 45479066 (+) False usp16
XM_036965698.1 mRNA downstream 863575 45443906 ~ 45479066 (+) False usp16
TU2385505 other upstream 169456 44408053 ~ 44410050 (+) True G2085969
TU2384668 other upstream 460267 44118223 ~ 44119239 (+) True G2085314
TU2384422 other upstream 845612 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 1046928 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 1515249 43063288 ~ 43064257 (+) True G2084659
TU2386442 other downstream 906306 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 949125 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 1216768 45797099 ~ 45798593 (+) True G2087149
TU2387599 other downstream 1742753 46323084 ~ 46323694 (+) True G2087569
TU2387647 other downstream 1913591 46493922 ~ 46496887 (+) False G2087592

Expression Profile