RNA id: TU2389621


Basic Information

Item Value
RNA id TU2389621
length 210
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G2089096
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48358662 ~ 48359011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTAACATGTTCCAGGTTGCCTCTGGGGATAACATCAACGAATACGCCGACTCAGTCATCGGATTCATCAAAAACAATACGCCGACTCAGTCATCGGATTCATCAAAAACAATACGCCGACTCAGTCATCGGATTCATCAAAAACAACGTAGACGATGTGATACCGACAGTGTTTTTCAAAACGAACcgaataaaaaaaaaacgtgaaT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389605 lncRNA upstream 41160 48317256 ~ 48317502 (+) True G2089081
TU2389560 lncRNA upstream 120614 48237198 ~ 48238048 (+) True G2089046
TU2389559 lncRNA upstream 123660 48233043 ~ 48235002 (+) True G2089045
TU2389556 lncRNA upstream 124625 48232621 ~ 48234037 (+) True G2089043
TU2389541 lncRNA upstream 144326 48214038 ~ 48214336 (+) True G2089029
TU2389632 lncRNA downstream 24941 48383952 ~ 48385354 (+) True G2089106
TU2389600 lncRNA downstream 44425 48403436 ~ 48404475 (+) True nars2
TU2389639 lncRNA downstream 47806 48406817 ~ 48407049 (+) True G2089112
TU2389676 lncRNA downstream 110719 48469730 ~ 48470815 (+) False G2089140
TU2389677 lncRNA downstream 110719 48469730 ~ 48470815 (+) True G2089140
XM_036964775.1 mRNA upstream 39577 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA upstream 39577 47640597 ~ 48319085 (+) True tenm4
XM_036965048.1 mRNA upstream 875628 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 1281941 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 1301741 47020501 ~ 47056921 (+) False prcp
XM_036965512.1 mRNA downstream 42242 48401253 ~ 48458439 (+) False nars2
XM_036964907.1 mRNA downstream 101438 48460449 ~ 48624448 (+) True gab2
XM_036964717.1 mRNA downstream 274361 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 274361 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 730872 49089883 ~ 49186113 (+) False trpc6b
TU2389529 other upstream 167300 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 167300 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 167300 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 493833 47854106 ~ 47864829 (+) True G2088870
TU2389165 other upstream 820717 47532422 ~ 47537945 (+) True G2088732
TU2389657 other downstream 73467 48432478 ~ 48455486 (+) True G2089124
TU2390619 other downstream 567964 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 698994 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 953732 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 964158 49323169 ~ 49323603 (+) True LOC118944717

Expression Profile