RNA id: TU2389697


Basic Information

Item Value
RNA id TU2389697
length 392
lncRNA type intronic
GC content 0.48
exon number 2
gene id G2089153
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48493935 ~ 48496506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAATAACGGGCCCTGTCTGGGAGGGTTATCATGACGTCTGCTTCAATAACGGGCCCTGTCTGGGAGGGTTATCATGACGTCTGCTTCAATAACGGGCCCTGTCTGGGAGGGTTATCATGTCGTCTGCTTCAATAACGGGCCCTGTCTGGGAGGGTTATCATGTCTGGTTAAATGCTATATTAGACATTTAGAACAACCCCTAACATGATGTGTTGGTTGAGATTCAGGGTAAAGAGGACAAAACGGCCCTCCAGTCTACAATAAGGTTCGTACCGTGCCTCAGCCCCTCACTATTTGTCAGTATGTTTAATGCCACAGGATTTCGCTAGAGGCAATTAGCTAAGTGGGAGTGGTGGTCAGTCCCTTATTACGGGGGGCTTTTTATTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389688 lncRNA upstream 5250 48487725 ~ 48488801 (+) True G2089147
TU2389685 lncRNA upstream 14150 48478538 ~ 48479901 (+) True G2089144
TU2389684 lncRNA upstream 16151 48477110 ~ 48477900 (+) True G2089143
TU2389676 lncRNA upstream 23236 48469730 ~ 48470815 (+) False G2089140
TU2389699 lncRNA downstream 4315 48500821 ~ 48501196 (+) True G2089154
TU2389714 lncRNA downstream 24400 48520906 ~ 48521204 (+) True G2089165
TU2389722 lncRNA downstream 45164 48541670 ~ 48541943 (+) True G2089173
TU2389723 lncRNA downstream 47940 48544446 ~ 48545999 (+) True G2089174
TU2389745 lncRNA downstream 81462 48577968 ~ 48579004 (+) True G2089190
XM_036965512.1 mRNA upstream 35612 48401253 ~ 48458439 (+) False nars2
XM_036964775.1 mRNA upstream 174966 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA upstream 174966 47640597 ~ 48319085 (+) True tenm4
XM_036965048.1 mRNA upstream 1011017 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 1417330 47074530 ~ 47076721 (+) True LOC110513068
XM_036964717.1 mRNA downstream 136866 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 136866 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 593377 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 704942 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 826507 49323013 ~ 49323866 (+) False LOC118944717
TU2389657 other upstream 38565 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 302689 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 302689 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 302689 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 629222 47854106 ~ 47864829 (+) True G2088870
TU2390619 other downstream 430469 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 561499 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 816237 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 826663 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 836941 49333447 ~ 49334183 (+) True G2090103

Expression Profile