RNA id: TU2389722


Basic Information

Item Value
RNA id TU2389722
length 218
lncRNA type intronic
GC content 0.48
exon number 2
gene id G2089173
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48541670 ~ 48541943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacattgtgtctgtctgtgtccaggCTACAGGTGTCCATaacattgtgtctgtctgtgtccaggCTACAGGTGTCCATaacattgtgtctgtctgtgtccaggCTACAGGTGTCCATaacattgtgtctgtctgtgtccaggCTACAGGTGTCCATAAcattgtgtctgtctctgtgtccaggcTACAGGTGTCCATAAcattgtgtctgtctctgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389714 lncRNA upstream 20466 48520906 ~ 48521204 (+) True G2089165
TU2389699 lncRNA upstream 40474 48500821 ~ 48501196 (+) True G2089154
TU2389697 lncRNA upstream 45164 48494051 ~ 48496506 (+) True G2089153
TU2389698 lncRNA upstream 47395 48493935 ~ 48494275 (+) False G2089153
TU2389688 lncRNA upstream 52869 48487725 ~ 48488801 (+) True G2089147
TU2389723 lncRNA downstream 2503 48544446 ~ 48545999 (+) True G2089174
TU2389745 lncRNA downstream 36025 48577968 ~ 48579004 (+) True G2089190
TU2389756 lncRNA downstream 58431 48600374 ~ 48600788 (+) True G2089200
TU2389764 lncRNA downstream 72496 48614439 ~ 48615501 (+) False G2089205
TU2389765 lncRNA downstream 72496 48614439 ~ 48616723 (+) True G2089205
XM_036965512.1 mRNA upstream 83231 48401253 ~ 48458439 (+) False nars2
XM_036964775.1 mRNA upstream 222585 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA upstream 222585 47640597 ~ 48319085 (+) True tenm4
XM_036965048.1 mRNA upstream 1058636 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 1464949 47074530 ~ 47076721 (+) True LOC110513068
XM_036964717.1 mRNA downstream 91429 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 91429 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 547940 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 659505 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 781070 49323013 ~ 49323866 (+) False LOC118944717
TU2389657 other upstream 86184 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 350308 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 350308 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 350308 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 676841 47854106 ~ 47864829 (+) True G2088870
TU2390619 other downstream 385032 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 516062 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 770800 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 781226 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 791504 49333447 ~ 49334183 (+) True G2090103

Expression Profile