RNA id: XM_021589828.2


Basic Information

Item Value
RNA id XM_021589828.2
length 1657
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110508917
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30399711 ~ 30401807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCGTGTTGTGATTTTGTCTTcattttgatctctctctctctaggtgagtTCTGGCTTGGTCTTGAGAAGATACGCGCTGTGGCCAAAGATGCAGACTACATCCTCAACGTCATGTTCTCCGACTGGAGGGGTGATTCTGAGACCATCCAGTACCCCATCCGTCTGAGCGGGGAGGAGAGCCACTATGACCTCCACATCCAAGAGACCTCGAACAGCAGCCTGGAGGGCACCCTGGCCACTGAGGCCTCCGGACTGCACTTCTCCatccacagccaagacaatgaccagaacaatgacatcagctGTGCCAAACACCTCTCTGGTGGCTGGTGGTTCAGCAACTGTGGACGTTCCAACCTGAACAGCCACTACTTCATGAGCCCTCCTCCCAAGCATAGGCATCAGAGGAAGCAGGGGGTCTTCTGGAAGACCTGGCGTGGCCACTACTATCCCCTGAAGACCACCGTCATGATGATCGCCCCCGCTGTGATCGAGAACAAGTCATAGAGGAAAGACGCTCAGTATTCTGACAAATTTTCTCCTCTTGAACTGAAACACTGTTAGAGGTGGTTAGCCGATGACTTGGGTAAGCTACCCAGTCAGTCCTGGCTTCACCCAGTGAGACTTCCAACAAAGACAAGGCCATTTTAAAAAACTAAATAACTCATACTTTTCAAAAGTCTTAGAGTCTCTCAGCTAGAGACAAAACCAAACCATGTTTAAAAAGTTAAGAAGTACATGAACATGTGAATCTAGCAGTGGAAAGTTAGCAAGAGTGTTTCACCAAAGCTGTGGCATGAGCTCACTCTTAATCACTGTTTAAAGCAACGCTCAGCCTTGGGACTAATGAATGGAACAGAATGAGGTGAGTTCAAACATGTTTTGTGTTGCAAGAAACCAAGCATTTTCCACATGGTAAGACCCATCTGACGGAGGTTTCTGAATGGTTAGAGCTCTCCCAGAGGTTGAATACTGCCCTCGTTGGCTCGAACCAGCCAATAGAAATCATTTAAAGAAAAATACTTCCGCTGTCTGATCTCTTATTAAACACACTGATGCAGCGAGAGAAACAATTCAGAAGTAGGTCAAAGGTCAAAATGGAGTAACATTCAAATAAACATAGCAGCCAACTCGAAGAAAAAAAACTGTCAAATGAACATAGTATTCAACTCAAAAACAGTAAAATTAACATCCCAGTGGACACAAACTGGTTTAATCAACTTTTGTTTCAACTTAGTTCTcaacgtattgtgacgtggaatctacgtggaaaatacattggatttgaaaagtcatcaactgttgttttgagggtgaaatttcaacgaCAGTATTATCTTTTCACGGTAACCAAATTTAAACCAAGCCAAACCTTATCCACTAATCCAAAATAAAAACTATAGGCtggacagcacctcctactggatgATTGATCTATAGCTACCCTTTAGTCTCCCacccagggttttaaccaagccctgcCTAGCTATGATATTTCTCACTGACTATAACCAATGTGCTATTGTGAGAATGACTGTTAAAATTTCCACTTAAAAATGAAATAGATTCACTGTTACCatcgaagtcattccaaagggtaggtttaaccGAGTAAATGAAATGTGACTATACTATATCACTCATATATTTAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2432066 lncRNA downstream 68022 30331386 ~ 30331689 (-) True G2127124
TU2432058 lncRNA downstream 74249 30323398 ~ 30325462 (-) True G2127116
TU2432050 lncRNA downstream 86003 30313477 ~ 30313708 (-) True G2127109
TU2432049 lncRNA downstream 87323 30312140 ~ 30312388 (-) True G2127108
TU2432047 lncRNA downstream 88170 30311204 ~ 30311541 (-) True G2127106
TU2432112 lncRNA upstream 21331 30422869 ~ 30423078 (-) True G2127168
TU2432115 lncRNA upstream 27384 30428922 ~ 30429590 (-) True G2127171
TU2432116 lncRNA upstream 28119 30429657 ~ 30429882 (-) True G2127172
TU2432076 lncRNA upstream 38739 30440277 ~ 30440998 (-) True G2127133
TU2432069 lncRNA upstream 40475 30442013 ~ 30447253 (-) False LOC110508919
XR_002471374.2 mRNA downstream 95299 30301087 ~ 30304412 (-) True LOC110508912
XR_002471372.2 mRNA downstream 120471 30273893 ~ 30279240 (-) True LOC110508910
XM_021589814.2 mRNA downstream 146341 30188885 ~ 30253370 (-) True mast3a
XM_021589813.2 mRNA downstream 156693 30188885 ~ 30243018 (-) False mast3a
XM_021589808.2 mRNA downstream 212451 30144035 ~ 30187260 (-) False LOC110508907
XM_021589830.2 mRNA upstream 7733 30409271 ~ 30416644 (-) True angptl4
XM_021589831.2 mRNA upstream 40475 30442013 ~ 30447448 (-) False LOC110508919
XM_036967076.1 mRNA upstream 228404 30629942 ~ 30649835 (-) False LOC110508217
XM_036967077.1 mRNA upstream 228404 30629942 ~ 30649835 (-) False LOC110508217
XM_021589842.2 mRNA upstream 299004 30700542 ~ 30704777 (-) False LOC110508927
TU2430565 other downstream 1275969 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 1320967 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 1513857 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 1707241 28692139 ~ 28692470 (-) True G2125290
TU2429926 other downstream 1736285 28662708 ~ 28663426 (-) True G2125270
TU2432121 other upstream 32897 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 152051 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 303547 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 842553 31244091 ~ 31244692 (-) True G2128216
TU2433314 other upstream 917745 31319283 ~ 31320623 (-) False G2128242

Expression Profile