RNA id: TU2434271


Basic Information

Item Value
RNA id TU2434271
length 753
RNA type TUCP
GC content 0.41
exon number 4
gene id LOC110508997
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32228406 ~ 32230258 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTGAACAGAATCTTCCCACATCACAACTCAGTCGGTGCTCTGTCGTCTGAAACAACATCATGCTTTTCCTATTACTTTGTGTTGGATGTGTTGCTTTGTCTGCAGGGCAATCCTTTGCTTCAACACCTACAATGGGACCATGGGCTACCACGACACAGGTGACAACACCTCCAACTCTTACTACCCCTTATGTGGACCCACCTTTTGGTACTAAACCCCTGGAAAGTGGATTTGCAATTCTTCAGGTCGCTGTCCAATCTTATCAGGAGCTAAATGAGACTACAGTTGGTTCTTTCTTCAGTCAGATCTACGACATCGTTCGGGCGAAGCGACCTGATCTGAAATTTCGACTGACCGTGAAAACTGTCCAGAAAGTTTGATGGATTATGATCCAAGGCATAGCAGATTGAAGTTCTAGTGGTACATCATGTTCTGCAGATGTGAACTATTGTACTGTATTTTCAATGATTTTATGCTGTTTAATATCAGTCATTATATTCATGTTAATAATATATTTGAATGTATAATTTCATTGACTTATTGACTTGCTGCGCATTCCAATCACCATCTGGGGGAGGAGCTGTAATTCAAGAGTTATGTCACAACTTTTCCCACTTTCATAGAATCTTGTCATCTGCGTCCAGTGTTTTCTGATGGATTTGATGTTGGACTGAATAGTCCTAACTACTGTAATCTTTTCTTTGGCTATAAACATGTTACAAATGCTGCAACTGTTCTCACACTCATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434161 lncRNA downstream 40923 32157032 ~ 32187483 (-) False asip2b
TU2434162 lncRNA downstream 40923 32157032 ~ 32187483 (-) True asip2b
TU2434132 lncRNA downstream 199181 32023058 ~ 32029225 (-) False LOC110508982
TU2434140 lncRNA downstream 199181 32023058 ~ 32029225 (-) True LOC110508982
TU2434137 lncRNA downstream 199768 32023058 ~ 32028638 (-) False LOC110508982
TU2434272 lncRNA upstream 10668 32240882 ~ 32243524 (-) True LOC110508996
TU2434304 lncRNA upstream 37493 32267707 ~ 32268032 (-) True G2129021
TU2434321 lncRNA upstream 66979 32297193 ~ 32297394 (-) True G2129038
TU2434324 lncRNA upstream 75085 32305299 ~ 32305562 (-) True G2129041
TU2434327 lncRNA upstream 79196 32309410 ~ 32309627 (-) True G2129044
XM_036966209.1 mRNA downstream 26582 32191802 ~ 32201824 (-) True LOC110508994
XM_021589927.2 mRNA downstream 29020 32191802 ~ 32199386 (-) False LOC110508994
XM_021589926.2 mRNA downstream 29021 32191802 ~ 32199385 (-) False LOC110508994
XM_036966208.1 mRNA downstream 29176 32191802 ~ 32199230 (-) False LOC110508994
XM_021589925.2 mRNA downstream 40887 32157032 ~ 32187519 (-) False asip2b
XR_002471383.2 mRNA upstream 11578 32241792 ~ 32243585 (-) False LOC110508996
XM_036966476.1 mRNA upstream 13902 32244116 ~ 32263430 (-) False ccdc39
XM_036966477.1 mRNA upstream 13902 32244116 ~ 32263430 (-) True ccdc39
NM_001160591.1 mRNA upstream 33429 32263643 ~ 32267018 (-) True dcnl1
XM_021589932.2 mRNA upstream 50689 32280903 ~ 32292193 (-) True LOC110509000
TU2434163 other downstream 63384 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 63384 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 63384 32157032 ~ 32165022 (-) False asip2b
TU2434105 other downstream 199848 32023058 ~ 32028558 (-) False LOC110508982
TU2434125 other downstream 199848 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 1168333 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1809992 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1811224 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1811355 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1814476 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile