RNA id: XM_036966770.1


Basic Information

Item Value
RNA id XM_036966770.1
length 4277
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110509006
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32628300 ~ 32655443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTACCCACGATGCAGTGCGGTTGTACATAACTAGCCTAGGCTAGCTAGCCATCTTGACAAGAATGAGGGAGGTAGCCGCTGTTCGGAATTTCAGTTCCCTGAAGTGTGAACTAGAGACGATTTATTATTGGAAATGGGTTACATATACCTTTGAAACGAGTGTTAGTATTGAATCGTTTTAAGTTCGTAAGTCAAGAGGGGAGAGGTGACTTGTTCCGAGAGATGTCTTACATACTTGTCCCAACGTAAAGAGAGTGTTgttgtagccagctagctagttgaGTGGAGAGGTACGGGCCCGCTTCACAGTCTAAAGTAGCTGCCGCAGCTGGGCAACTCTATCTGCGACAGCCGCCATCTGACAACTACGGGGTCCGGACATTACTTTACTGAACAGGCCGGTACGGACGGATTAAAGCTTTGGATCAGTTATCGAATTACTACTTCTATTGGCAAAGGCTGGACTTGGAAGGGTTGGTCTTCAATGTTATGAACTCGTAAAATGCaacaggagacgagaggaggaaGGAACAAGGATGACTCATACTCCTCTTGATAATAGTTTAAAAAAACTTCCATCGATGCAAATTCGCTGTTTCAGATAGCCAGTTGTCAGCTGATATTAGCTAACTCACTTGCTTTTAACGCGAGACATTTAGACGGGAGTTGTGAACGCAGGCTCTCAAAATGTCTAAAATGCCGGCTAAAAAGAAAAGCTGTTTTCAGATCACAAGTGTGACACAGGCTCAGGTGGCGGCCAGCAGTGCCACGGACGACACGGAGAGCCTGGATGACCCAGACGAATCACGGACTGAAGACGTGTCGTCGGAAATATTCGACGTGTCCCGGGCTGACTTCGAGCCGGAGGTATGTGATCGAAGTTCGTCTGAGGAAACCCTAAACCATGTAGGGGAGCAAGAGGCACCAGGCGTTATGGTCCCACCGCGTAGTGTACCTAAAGTTGGGCAGATACCTGCAATGTCGGGGCCTCCAAATGAAGGTTTTGCTATTCGAAAGGCAGGAGTGGCAGGCTCGCCTCATGTTAGCCAGCAAACACTGGGAAGTGGTTCGTCAAGCGGCCTCCCTATTGCTCAGTCCGGGCTCATGCCACAGCCTGCCCCAGTGGCCAGTTGGGGGGCTACAACAGTGTCAGTGAGCACATCCCAGTCAGTATTGACTAGTTTAACCCCTACTTCTGCTATGTCATCGACAGCAAGTTGCAGTTCACGTTTCAGGGTCATCAAACTTGACCATGGTACTGGAGAGCCCTTCAGAAAGGGCCGATGGACTTGCACAGAGTTCTATGAGAAAGACTCAGAGGGTAACACTGTGGTTAACAGGACTACGGATAACATTAGACATGCCAATGCATTTGACCCCAGTGCTGACAGGGACAGCGGATTGGGGTTGACTGGTGGTACTGTGGTTGCACCGTCGACTCACTCCGGCCAGGGCCTAGACTCCATAGTGGATGCTGCTGCTCTTAATGCCTTGCACGTTCACCCAATGGACACActgcaacagcagcagcagcctcacCACCAAAACTACAACATGGGGCAGCCTGGAACAGCCACACACAACACTTTCCCCACCAACAACCTCATGGCTGTCCCAGGTCAGCAGCCAACGCTGAGTACTATCCAACCTGCTGCCAACCAGAACCTCTTTCCTGTGGGGCTCAACGGTCTTCCTCAAAGTGGCATTCACATACAGAAATCCCCAAGCATGACCCCTGCAGCACAGACCCAGACGCTGGCTTACCCTCCCCAGCAGCAGGCCATGCTACAGCAGCTTCCACTGGGACAGCACCTGCCCAACCAGCCCCCAGGCCTGCCCCAGAACCAGGCAGACTACTACCAACAGAACCAGCCTGGCATGCAGGCAGTGGCCTCAGCTGGCCAGACCCTCTATGTGGGACAGACTGTGGGTCAGGGCCCGTCACTGGTCATGACTCCCGCCACCGGGGTTCCGATGCTGGGGCAGGTAGGGGAGATGGCAGCAGTTGGGGGAGGAGGTTCTTTACCTGTCAGTCAGCCAGCTTCAGGCCTGATGGGTGGAGGTGTGGGAGGTGTTGGGTCATCCATGGTACTGGGCGGAAGCTCTACTCTGCAACAGCTTGTAGGTCAGTATGCCCCCACGGGTATTCGTCAACCCTTCGGCCTCCACCCTTCGCCCCCCGGCACCCAAAACGTGCCCACCATTGTGCCCAGTGCCTCCAGCGCCACCACATTAGCCCCCACCGCCAAGCCAAACCTGACTGCCTCCTTGTTGCCCGGGCAACAGGCCCGCGATGGCAGGGGGGCGCAGGGCCTCCCGGCGGCTGGGTTCAGCCATGTGGAGGAGGGCCAGCCTCCCGCCTTCTCTGAGAAAAACCTGATGAAGATCCCTGAGAGCCTGCAGCTGGCCAACAACCCCTCTGTGAACAGCCTGTTTGGAATAGCCATAGACGGAGACGAGGACAGTGCCTCTGGAGCCAGTGTTGTTGCCATTGATAATAAAATCGAACAGGCGATGGACTTAGTGAAAAGCCATCTGATGTATGCAGTGCGTGAGGAGGTGGAGGTGCTGAAGGAGCAGATCAAGGAGCTGTTTGAGAGGAACTCTATGCTGGAACAGGAGAACGCCGTGCTGAAATCCCTGGCCAACAGCGACCAATTGTCTGAGCTCTCCGTCCGGCCGGCCGCCACAAACTCCTCCTGCAGCACGCCTCCCCAGCAAGGGGTGGGCCAAGGCCAGCCTCAGCTCCAGGCCCAGCCTCAAATGCAGCCTCAGCTCCAGGCCCAGCCTCAAATGCAGCCTCAGCTCCAGGCCCAGCCTCAAACGCAGCCTCCGCTCCAGGCCCAGCAactccagccccaaccccagcttGACGCCAGCCAGCCTTTGCTGCAACCGCAGCCCAACGGCAACTCCGCTTGAAGTGCATTCCCCCCCAGCAGGAGAAAAAAAAGCAGAAAAGCACCCTCCAATTATTCTAAATTAGCATACGAAACAACAAAATAATTATATTGTCTTGTTCTCCACCAGCTTGGCCACCATAACCAAGAGCAGTGCTTCTGTGCCTGTTTGGCTTTCCCAGTGTTAATGCAATCATTGCGCGAGAGAGACGGGGGCTTTTCTTATGGGGCGCCAGCCTGGACTGGTTGAGTGCTGTGGAccagatctcccccccccccccccccggctacAAAGGAGTTGTGCAGCTCACATGAGGATGAATCGGAGCGTCCCagagatgttttgttgttgtaagagATGTGTTTTTAGCCTTGCTGTTCCATGTTGTAAGTAAGAAGTGGGGGAGAGATCTATTTTCGGAGCCGCGCCACCATTTCTTCTTCGACATGAGTCCAATCCATGCATCAGTCTAAAGTTCTACGGTTAATGTTTATTTATTACGGGGCTGCTATTTTCATGAAAGGAACAATGTCACAAAAAAAACGATTAAAAAAAAAAGGCCTTTTTTTTTGTCATCAGTGTTTAAAATAGTCTGTACACACAATTGGCAGTGTATTACATTAACCAGTTGAATATGTAGGCAATAATCAAGAAACTCTGACATACGTCTAACACTAAACAGGCAGTTTTACAATGGAATTGTTTATCCGCACCAGTCAAGATCCAGTTTGAATGTACATTTTGTATAGTGTAAAGTATTAAGAACATAGCAAAGTTTGTACAGGTGAACACCAAGTCTACGGACAGGAAATCTGAACGTGAATCTGCGGTAgactatttttttttaacaaacttCCAATCCAATTGCTAGTTTCTTTGTCTCCAAAATGGAACGTTTATTGTCATACTCGTCTTCTTGTACATGtgtttttggggtgggggggaaaAAAGCTGTGAAATCGTTCATACCTACTTTGTAACCAAAGATGCAAAGCTGTAATTCGATTTATTATTTTGTAATGTGCActtctgtatatattttttttctcactttcacaacaaaatgtttttgttgCTGTTTAGCATGTTCTGCATGATCTGTAATTTTCAAACCACTTTCTTACCTCATATTTTTATTCAGCACTCTTATTGTAAGATAGTAGTCTGTGAACAATGTAAATGGGGGGGAAAAAAGACATGGAGACAAAGAGCTAGGGTTTTGGTAGAGCGATACAAACAAGTGTTAAGTACACTAGCTACAGAAAATGAAGTGAGCCATGTTTTGTTCATTTAAATGGTGTTTGAATTTCATATGCCAATAGTTTTGTTACATTGCAAATTTAATGTATTTAAATAAATGCAATATTCAGATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435437 lncRNA downstream 63092 32565005 ~ 32565208 (-) True G2129998
TU2435352 lncRNA downstream 122429 32505336 ~ 32505871 (-) False G2129919
TU2435353 lncRNA downstream 122429 32505336 ~ 32505871 (-) True G2129919
TU2434392 lncRNA downstream 202859 32379801 ~ 32425441 (-) True G2129099
TU2435506 lncRNA upstream 63800 32719237 ~ 32720885 (-) True G2130055
TU2435509 lncRNA upstream 68534 32723971 ~ 32724470 (-) True G2130058
TU2435511 lncRNA upstream 69857 32725294 ~ 32725766 (-) True G2130060
TU2435392 lncRNA upstream 72340 32727777 ~ 32732290 (-) True G2129953
TU2435539 lncRNA upstream 166589 32822026 ~ 32822820 (-) True G2130086
XM_036966766.1 mRNA downstream 13761 32598428 ~ 32614539 (-) True cpdp
XM_036966767.1 mRNA downstream 13795 32598428 ~ 32614505 (-) False cpdp
XM_036966281.1 mRNA downstream 113434 32462184 ~ 32514866 (-) True LOC110509003
XM_021589933.2 mRNA downstream 295881 32312071 ~ 32332419 (-) False LOC110509001
XM_021589944.2 mRNA upstream 44601 32700038 ~ 32704296 (-) True ahsg2
XM_036966335.1 mRNA upstream 80711 32736148 ~ 32751440 (-) True LOC110509013
XM_021589956.2 mRNA upstream 130469 32785906 ~ 32788215 (-) False LOC110509017
XM_021589957.2 mRNA upstream 130469 32785906 ~ 32788215 (-) False LOC110509017
XM_021589958.2 mRNA upstream 130469 32785906 ~ 32788215 (-) False LOC110509017
TU2434271 other downstream 398086 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 463278 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 463278 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 463278 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 599742 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 743110 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1384769 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1386001 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1386132 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1389253 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile