RNA id: XM_036966335.1


Basic Information

Item Value
RNA id XM_036966335.1
length 3096
RNA type mRNA
GC content 0.58
exon number 6
gene id LOC110509013
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32736148 ~ 32751440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgcaggaagcAAAGATATCTGATTGTTTACATATCTACACAGGTGCCATCTGTGAGGAGGACACTAACACATGTGAACTGCTACCGTGTCAGAATGGTGGCGTCTGCGAGAGCCATCATGGAGGCTACAGGTGCCTCTGCTCTCAACAGAGCCAAGATGGCCATCTGTACGGAGGTGAGAACTGTACAGTCGCCCTTCTGGGCTGCGATGGCAACCACTGCAAGAATGGCAGCATCTGCTCTCCCCTCTTCCTGAACGACCGCCACACCTACACCTGCACCTGCCGTGCGGGCTTCACCGGCTCCAACTGTCAGACGTCCACCATCTTCTCCTTCGAGACCAGCGGCTACATGTACGTGGAGACCCAGCTATCGGACCCTGAAGTACCTCTGAACGTCACCCTAAGCTTCAGGACGGACCGGCACGTCGGCACCCTCCTCCAGCGCCGGGTCGAAGACTTGCTGCTCACCATCGAGCTGGTCGACAGCCACTTACGCCTCAGCATGCTAAGAGGTCAAGAGTCAAGAAGGGCAGTGGTTCTGGAGCTACCGCAGAGCGTGTCGGATGGCCAGTGGCACACAGTGGAGGCCTGGCTGGGCAGTGAGGCGGAGGGAAGCGGGATCAGATTGCGTCAGTCCTCCTGTGATGAGGTGGGCTGCACCAAGGAGTTCCCAACCACCGAGACCCCCCTACTGGAGCAAGGCTCCGGCCTCTCCGAGTCCGGCTCAGTCCGTCACAGCCTCTTCCTAGGAGGTGTGGGACTGGGCTGGGGCTCCGGTGTGGTAGCAGGAAAGAGGATGCCTGAGGCTGCTGACCCTTCTGTCCCACTTGTCCCGCCTGCCCACTTCCTGGGCTGCTTTCGGGACGTGTTTGTGGAGTCACGGCTGGTGGTGCCTGCCCCCGCCAACTCACCGGCTCAGATCAACGTCACAGCGGGGTGCAGCGACAAGGACAAGTGTGACGACAACCCGTGTCAGAACCGGGGGCATTGCATAAACCAGGGATGGAGGAGCTATGTGTGTGAATGCTACAGACCATACAAGGGGACTACTGACTGTGCTGAGGAGTACATCACCGCCAAGTTCGGGTACGAGGACGTAGCAAGCTATGCCGTCTTCTCCTTGGACGATCCCCTGGGTTCTGGCACCATCACCATATCCATGTTTGTGCGTACCCGGCGCCCCAGTGGCCTTCTCCTGGTCCTGGCTAACAGCACCAGCCAGTACCTCCGCCTGTGGCTGGATGACGGCCGGGTCAAAGTTCAGGTGAACAATTTTGAGAGCCTGGCGGGAAGCAAAGTGGTCAGTGATGGCCACTTTCACTTGGTGACGGTGCAGCTGGAGGGCGACTCTGTGACCCTGTTCCAGTCGGCCCAGAGCCATGGAACCATTCCCATCCGGCCCGTGGTGGCGCAGCCAGGGGACCTGGTCTACGttgggggcttgtctgaccagaGAGCCTCGGCCTCCTTCGGGGGTTACCTGAAAGGCTGTATCCAGGACCTGAGAATAAACAATAAACGGCTGCAGTTCTTTCCCATAGGAACTTCAGTGGCCTCATACGGTGTGGAGGAGCTGGTCAACGTCACACAGGGATGTATGAGTGACAACGTCTGCAGTAACATCCCATGTCTGAACGGCGGAGTGTGCTACTCCATGTGGGACGACTTTATCTGCAATTGCCCACCCAACATTGCAGGGCGGCGCTGTGAGGTGGTCAAGTGGTGTGAGCTGTCTCCGTGCCCCTCGACCGCAGCCTGCCAGACCCTCTCACAGGGCTTTGAGTGTGTGTCCAACGTGACACTTCGGAATGACAGCATACTTTCCTACAGAGGCAACGGAAAGATCAGGCACCACCTCAGCAGCGTCCTCCTAAGTGTGCGAACCAGACAAACGAACGCCACCCTCCTACACACCAAGAAAGGCTCTGAGTTCATCACCATCTCCCTCCAGGACTCTCACCTCCTGCTAGAACTACAGGCCGGTGGTGGTGAGGCCTCCCCCAAGCTCACTGCCCAGAGCCGGGGCCTGGTCAGCGACGGCAAGTGGCACATGGTGGAGCTCTCCATGGAAGCCCCGGATCTACAGACCTCCAGGTGGATCATTGTCCTGGATGGGGGAAGAGATGGAGTAGAGGAGGAGCATGTTGTGTCCAAAGTCGCCTCTGGGAGCCTGGCCTTCCTCAGGGAGGGAGTGGACATCCTCCTGGGAGGTCTGGGGCCAGAGGCTGGGGGGAATTTGGATGGATGTCTGGGCCCTGTCCAGATCGGGGGGCTCCCACTGCCCTACTATGGAGATACTGACCTGAACCTTCCCAGGCCCCAAGAAGGGCAGTTTGTGAGGACCCCCAGTGCCGTCACCCCCCTATATGGCTGCCGGGGGGCTAGTGTGTGCACGCCGAACCCTTGTCTAAACCATGGGGTGTGTGAGGAACTCTTTGACCTCTCCCTCTGCAGGTGCCCTCCTGAGTGGATGGGGCCACAATGCCAGAATGACGTGGACACCTGCGCCGTCAAGCCCTGTGTCCATGGCAACTGCAgtgtgttgggggagggataTCTATGTGCGTGTGAGCCGGGGTATGGGGGGACCAGGTGTGAGAAGGACGTGGACACGTGTGAGAACAACAAGTGCGGCCCGGAGGCCACCTGTCTCAGAGGCCTCCTGAACTATGCCTGCCACTGCCCCAGGAACATGACCGGGCCCTTCTGCGAATACCCCAACCTGCCCACGTCCGTGTGTCCTGGAGACAGATGGAATTACAGCTGCTTCAACGGGGGGAACTGCTCTAAGCAAGACTACACCTGTGACTGTCTGCCCGGTTTTATAGGGCAATGGTGTGAGGTAGACTTTGATGAGTGTGCGTCGGGCCCCTGTGAATACGGAGGCTACTGCCACAACCTCGTCAACCACTTCCTCTGTATATGTGAGATGAACTTCTCAGGTGACCAGTGCCAGATCGATGTCAGCGACTTCTACTTGTACCTGGCCTTGTTGCAATTCCAATATGTGTTCCAGCTCATGTCCTACCTTATCTTGCACCTCGACGATGGCCCAGAGATCGACTGGGGACAACTGCAAAGAGATGACGACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435392 lncRNA downstream 3858 32727777 ~ 32732290 (-) True G2129953
TU2435511 lncRNA downstream 10382 32725294 ~ 32725766 (-) True G2130060
TU2435509 lncRNA downstream 11678 32723971 ~ 32724470 (-) True G2130058
TU2435506 lncRNA downstream 15263 32719237 ~ 32720885 (-) True G2130055
TU2435437 lncRNA downstream 170940 32565005 ~ 32565208 (-) True G2129998
TU2435539 lncRNA upstream 70586 32822026 ~ 32822820 (-) True G2130086
TU2435541 lncRNA upstream 72953 32824393 ~ 32825566 (-) False G2130088
TU2435543 lncRNA upstream 72953 32824393 ~ 32825566 (-) True G2130088
TU2435544 lncRNA upstream 74692 32826132 ~ 32826947 (-) True G2130089
TU2435403 lncRNA upstream 78577 32830017 ~ 32835141 (-) True G2129964
XM_021589944.2 mRNA downstream 31852 32700038 ~ 32704296 (-) True ahsg2
XM_036966769.1 mRNA downstream 80705 32628300 ~ 32655443 (-) True LOC110509006
XM_036966770.1 mRNA downstream 80711 32628300 ~ 32655437 (-) False LOC110509006
XM_036966766.1 mRNA downstream 121609 32598428 ~ 32614539 (-) True cpdp
XM_036966767.1 mRNA downstream 121643 32598428 ~ 32614505 (-) False cpdp
XM_021589956.2 mRNA upstream 34466 32785906 ~ 32788215 (-) False LOC110509017
XM_021589957.2 mRNA upstream 34466 32785906 ~ 32788215 (-) False LOC110509017
XM_021589958.2 mRNA upstream 34466 32785906 ~ 32788215 (-) False LOC110509017
XR_002471391.2 mRNA upstream 34466 32785906 ~ 32788215 (-) True LOC110509017
XM_036966227.1 mRNA upstream 38713 32790153 ~ 32795726 (-) True LOC118944826
TU2434271 other downstream 505934 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 571126 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 571126 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 571126 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 707590 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 647107 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1288766 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1289998 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1290129 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1293250 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile