RNA id: TU2435392


Basic Information

Item Value
RNA id TU2435392
length 4514
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2129953
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32727777 ~ 32732290 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctataatctttggctacattgaaTGTTTTCTATTAACTACTTCATGTATTTATCTTATTCTTGCTTtgcatattcctctttgatttagacgatactgttgcacaaacgaTATGCTGaatgctgatttaggtctacaccatcactggtattattaGGCTGCATAGCTAATTatgtttgctctgactcagtacatgTAACAGCTAGCTGGCGATTAGCGTTAGCAGCTAACAGGATTATGGCCCAACTTGCTTAGAAAATACAATCTAGGTGTtagcagatgtaagaaacacaaacaaatcgTGTAATTATAGAAtgctagtggatttatattaagaagcaaagtgaaaaccATCGTTGTCATCAATATTGTTGCATGTGCTACATTGACCATCCAGACTGAACACAAGTGTCTCGTGATTGAGTAAAAACAAATGCcatccttgagtgacagggggcggtattaggtctgtgtggaaagtggcatggagagagagcggagaagtaaactataaaaatgtacGTTACACACGGTGTATCCCATTTCACAAACCAAACATTCATataccgttatagaaggtaaagtaaaaacccaaaccaaaAACCCAAATCCGTGCATCAATACGGGTATATcataaaatacggtataccgcccagccctagctaggcctattatatttatttatcaactttcctaatattaagcacattgcttatatatacaacaggagtatagcctacctggctggcatgacaATAATCCACAGGGAAAGTGTCCTCCATtggctatttaagtgcatagatgacatgtattgattttttctaatcatagtcgcacacctcatgtagcctagcccataggcctatatgttttaataaggcttgtatcacaactaaagtggccaaataacgtcttaaaatgaagcacattaatccgctttacaaggggtgtggAGCCTAACAGGCAAATAAGCAGATATAAGCAgcacgtgagtttcaagtttggggaagttAATTTTCACTATAAAAtagcacctttataataaaagcattacatgcataattgcatttgcagtcacttttgataatggcattttccactaatggaacattcacgcttatagccaactaccatgtgcgcattgctgtgcttataaAGTGAAGAAACAgactaatagtttatcaacattttaagctaaacgttctgatctgttgcgtcagccacatttcgttaaaaaaaatgttgatgctagtggttgtattaatttgggatctatcgtgtcccacaactgtccccgactatgtttggaatatttatctctcgcacagaatagaataggttgacctttgtactatgggggatagtagattgacataggctagtgcttttgctgtcagttaggcctactcatcttgttggctgactaaaGTAAATGTGGGCAGTTCTTGCAATATATTCAATATGCAccttggaattggataaggatgcaCGCAGTTGCGTCCCTGATGAGTCTGTCtccacttgtagcctgtgagaaagacccgatcatgtGATGGAGTACGCAGCACTCAGGGAGGAGGGTACAACagccactggccgcaaaaggcatgtaTTTTTgcgtgcattacggccacacaaaggggatgccgccgtgaaattctacacattatcaagtgcttgtcaaattgtgaatgagtgactgatgtagtgtgtacagcctgcgcaaaaacaaaaacaaagcagagccATGACTTTCAAGTGAagtttttcaaatcatcatgCAGCcatacaatgtattaaaaatcaaaacacatATCCCAaagtttgtagaacaactaaagttacattaataactataaattagcatataggagtacctatttctttgctaaccgctcaacacagaatagccgcatgtgatatatcctttctattttattcagctttgttcaattgtattcttcataccataaaataatgccacagaattttaagcaaatcttgtctgctaaattaactagtgtagcccatgGCCATTTGTATAGCCAGATCAGGActtaacataaggacaactcagagtgtgctattatgttcttctgaaatagactacattttcttcatatcatgcttctttagacctttctaaaataaataatggctttattgtggaggtgtaggctatattacatggatttattagactttatGTAGATGTTCCGAAGGTCAGCATCAGTGAttaataaaaaagtataccagtttaatttaaggaccaaaaaattgacagGTGTGCCATACAGACTGCAAAATAGAAGAGATTTTTGAGGTACTAATTCCATATGGTTTACGGACTGATACTCAAAACGACACCGGATTCAAAACTTAGAACTTCAGAATGTTTTTCTGTAAATTATTATACCACATTTTTGCAACCAGTATAATGTTTTATATATGGGGATACAAACATAActgctctgcagattttgctgcgaagagacaaaATCATtagttttggtactgtccatatgtagcttgtttttggttgcAGGTCCAGGAAtgactgaagaattgcaacattgatttgaaaagtcatagtcaaccGATCAATAACATAgtaatacttttagcaaaaatgtgtatctttaatttacaatctgtagaaactatgagaatacaAAGGTTCAGAaattttgtgaaacatcacagcacagttgaaaaatatatgacaaatagaaatccaatatggatgatgttaagagatagatgagaggggttgagaggagctgaaggttgggactaataacaacaagataactaatgtaaaatatactgtgtacTTAAAATGtctataggttcagaacttttgtgaaacagcacagttaaaaagatatggcaaatagaaatcaaactggattgTCTTCAGaaacagatgggaggggttaagGGTAGCGGAGGGATAtgagtaaaaacaaacaaaagataactattgtaaaatagattgtgtccgtaaaatgtatatagtatgtataagctggaaatagaagcctaagtgttgttgttccttagtttactccaattagggaagGGGTGGTATGGTTAGAGGAAAAATAATAAAGgatgtttttttaaagatgtatataatatgtgtatgtatgtataaacatatgtgtgtatgtatgtatgtatatatacagtaccagtcaaaagtttgaacacacctactcattcaagggtaatTAGATTTttacgattttctacattgtagaataatagatgtagacatcaaaactatgaaattacacatattgaatcatttagtaaccaaaaaagttataaacaaatcaaaatagattttagattttagattcttcaaagtagccaccctttgcctcgatgagaCCTTcgcaccctcttggcattctctcaaccagcttcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgaacacttgttggctgtttttccttcactctgcggtccaactcatcccaaaccatttcaattgggatgaggtcgggtgattgtggaggccaggtcatcttatgcagcactacatcactctcaTTTTcagtcaaatagctcttacacagcctggaggtgtgttttgggtcattgtcctgttgaaaaacaaattatagttccACTAAGTCAAAcgagatgggatggcgtatcgctgcagaatgctgtggtaaccatgctggttaagtgtgccttaaattctaaataaatcacaaacaatgtcaccagcaaagcacccccacatcatcacacctcttcctccatgcttcacggtgggaaccacacatatggAGATCATCCACTCACCTACTCGGAGTCTCACAAGACACAGCGGTTTGAacccaaaaaataataattggactcatcaggccaaaggacagatttctaccggtctattatccattgctcgtgtttcttggcccaagcaagtctcttcctcttgttggtgtcctttagtagtggtttctttgcagcaatttgaccatgaaggcttgattcacagtctcctcagaacagttgatgttgagatgtgtctgttacttgaactctgtgaagcatttatttgagctgcaatttctgaggctggtaagtaATGAactttctgtggcggtcctcatgagaaccagtttcataaTAACACTTCATGGCTTTagggactgcacttgaagaaactttaaaagttcttgaaattgttccggattggctgaccttcatgtcttaaagtaatgatggactgtggtTTCTCTGTTTATTTCaaatgttcttgccataatatggacttgggtcttttaccgaatagggctatcttctttataccaccccaaccttgtcacaacacaactgattggctcaaacgcattaagaaggtaAACAATTCCACTAATttaattttaacaaggcacacatgttcattgaaatgcattccaggggactacctcaatccaattgagatggtttgg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2435511 lncRNA downstream 2011 32725294 ~ 32725766 (-) True G2130060
TU2435509 lncRNA downstream 3307 32723971 ~ 32724470 (-) True G2130058
TU2435506 lncRNA downstream 6892 32719237 ~ 32720885 (-) True G2130055
TU2435437 lncRNA downstream 162569 32565005 ~ 32565208 (-) True G2129998
TU2435352 lncRNA downstream 221906 32505336 ~ 32505871 (-) False G2129919
TU2435539 lncRNA upstream 89736 32822026 ~ 32822820 (-) True G2130086
TU2435541 lncRNA upstream 92103 32824393 ~ 32825566 (-) False G2130088
TU2435543 lncRNA upstream 92103 32824393 ~ 32825566 (-) True G2130088
TU2435544 lncRNA upstream 93842 32826132 ~ 32826947 (-) True G2130089
TU2435403 lncRNA upstream 97727 32830017 ~ 32835141 (-) True G2129964
XM_021589944.2 mRNA downstream 23481 32700038 ~ 32704296 (-) True ahsg2
XM_036966769.1 mRNA downstream 72334 32628300 ~ 32655443 (-) True LOC110509006
XM_036966770.1 mRNA downstream 72340 32628300 ~ 32655437 (-) False LOC110509006
XM_036966766.1 mRNA downstream 113238 32598428 ~ 32614539 (-) True cpdp
XM_036966767.1 mRNA downstream 113272 32598428 ~ 32614505 (-) False cpdp
XM_036966335.1 mRNA upstream 3858 32736148 ~ 32751440 (-) True LOC110509013
XM_021589956.2 mRNA upstream 53616 32785906 ~ 32788215 (-) False LOC110509017
XM_021589957.2 mRNA upstream 53616 32785906 ~ 32788215 (-) False LOC110509017
XM_021589958.2 mRNA upstream 53616 32785906 ~ 32788215 (-) False LOC110509017
XR_002471391.2 mRNA upstream 53616 32785906 ~ 32788215 (-) True LOC110509017
TU2434271 other downstream 497563 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 562755 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 562755 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 562755 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 699219 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 666257 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1307916 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1309148 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1309279 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1312400 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile