RNA id: TU2417069


Basic Information

Item Value
RNA id TU2417069
length 201
lncRNA type intronic
GC content 0.47
exon number 1
gene id G2113660
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19216873 ~ 19217073 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacctactgtgaagcatcggggtggaaacatcatgctttggggctgtttttctgcaaaggaaccaggacgactgatccgtgtaaaggaacgaatgaatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaatgtggctgggtctttcagcatgacaatggtccCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2417065 lncRNA upstream 11550 19205088 ~ 19205323 (+) True G2113656
TU2417052 lncRNA upstream 19332 19193827 ~ 19197541 (+) True G2113648
TU2417049 lncRNA upstream 24583 19191937 ~ 19192290 (+) True G2113646
TU2416988 lncRNA upstream 115423 19101230 ~ 19101450 (+) True G2113593
TU2416975 lncRNA upstream 138523 19078098 ~ 19078350 (+) True G2113580
TU2417120 lncRNA downstream 63404 19280477 ~ 19283775 (+) True G2113705
TU2417074 lncRNA downstream 96378 19313451 ~ 19324707 (+) True G2113661
TU2417141 lncRNA downstream 109897 19326970 ~ 19327219 (+) True G2113726
TU2417143 lncRNA downstream 112526 19329599 ~ 19329930 (+) True G2113728
TU2417144 lncRNA downstream 113443 19330516 ~ 19330737 (+) True G2113729
XR_005040194.1 mRNA upstream 7803 19205372 ~ 19209070 (+) False LOC110508679
XR_005040193.1 mRNA upstream 7803 19205374 ~ 19209070 (+) False LOC110508679
XR_005040192.1 mRNA upstream 7803 19205380 ~ 19209070 (+) False LOC110508679
XM_021589392.2 mRNA upstream 8756 19205390 ~ 19208117 (+) False LOC110508679
XM_021589393.2 mRNA upstream 8756 19205390 ~ 19208117 (+) False LOC110508679
XM_021589394.2 mRNA downstream 408 19217481 ~ 19322102 (+) False LOC110508681
XM_021589395.2 mRNA downstream 408 19217481 ~ 19322102 (+) False LOC110508681
XM_021589396.2 mRNA downstream 22393 19239466 ~ 19322102 (+) False LOC110508681
XM_036965994.1 mRNA downstream 26261 19243334 ~ 19322102 (+) False LOC110508681
XM_036965995.1 mRNA downstream 39583 19256656 ~ 19322102 (+) True LOC110508681
TU2416973 other upstream 140455 19076077 ~ 19076418 (+) True G2113578
TU2416413 other upstream 548377 18667115 ~ 18668496 (+) True G2113059
TU2415395 other upstream 1312949 17903198 ~ 17903924 (+) True G2112127
TU2414674 other upstream 1461292 17754937 ~ 17755581 (+) True G2111491
TU2414638 other upstream 1508244 17708256 ~ 17708629 (+) True G2111457
TU2417581 other downstream 406395 19623468 ~ 19636753 (+) True LOC110508695
TU2418949 other downstream 1224660 20441733 ~ 20442169 (+) True G2115369
TU2419398 other downstream 1623497 20840570 ~ 20842003 (+) True LOC110508722
TU2420043 other downstream 2157422 21374495 ~ 21375078 (+) True G2116347
TU2422383 other downstream 3863343 23080416 ~ 23087819 (+) True smg7

Expression Profile