RNA id: TU2433943


Basic Information

Item Value
RNA id TU2433943
length 1447
RNA type TUCP
GC content 0.44
exon number 7
gene id G2128753
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32269318 ~ 32274380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGAAGTTGGAGAAGGATCATGTCTAGCAACTCTCCTGATTACAACAGGCTGCAACGTCATCGCCCAAGCACGGGCAAGACTCTATCCTGCAGAATTGGACCCTGGCTCAGCAGGTATGCTGTGCCTGAGGTCTGGATAAATGTACATGTTTATCCGACCCAGGCGGCATATTCGGATAATCTACAACTGAAAAGAAGGGGCTTCTGGCTCTGGGGGACTACATGGGGGCCTGCCATGCCTAATTTGGGCACTAATGTCCGCAAAGAGATGCAGAAGCTGCAGACTGAGTCCCCCCACATTGTGGTGGGAACTCCAGACTGGATGTTTGATGCTTAACAGGTGACGCCTGTAAGTACTCATCAGTGTGGTCCTCCTGTCAGCCACCATGCCTACTGATGTGCTAGAGGTGACCAAGAAGTTCATGCGAGAGCCCATTGGCATTCTGGTGAAATAAAAGGAATTTCCCTAGAGGGTATTAAGCAGTTCTACATCAATGTAGAGTGAGGAGTGGAAGTTGGACACATTGTGAGACCTGTACGGGATGCCAACAGTTACTCCGGCAGGCATCTTCCTCAACACCAGGAGGATCTGCTGGCTGACTGAGAAGATGCACTCAAGGGGCTTCACGATCTCTGCTCTGCATGGTGACATGGACCAGAAGGAGAGGGATGTCATCATGAGGGAGTTGGCCTGGCTCAAGCAGAGTACTCATCGCTACGGACTTACTGGCTCGGAATTGATGTGCAGCAGGTTCCTTGGTCACCTTCCTACAAAGAGGGAGAATAATATTGAGTGAGAAGTTTGCCTATCTTGACTCAGACTTCTGATATTTGTAAGATATGGTGGTCATGGACAGTTGATTTTAACCTTGAGTTTCTGGTTGAAACCACAAGCTATCAAGACTAAACAATATGGTTCTTACCAGTCATTTATTTCATTGTACAGTTAAGGTGTGTGGTTTTAGGTAGTTGTGGACTGACTGGTATAAGTGGTATTATGTCTGCCAATTATTTTATGGTAAcatactgcatcttgcctatgctgttctgtaccatcactcattcatgtctttatgtacatattctttatccctttacacatgtgtataaggtagtacttttggaattgttaggttagattactcatgcttattactgcactgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtggatgtgacaaataaatttgatatgATGTGCGGTGTAATGAGTCTGCTCCAATGTTATTGATTTGGCTCACCTGGATATTTTTATTTTGACTTGAGCGTACCAATCACCCTTTGTCAAATCATCAGTGACTATTTTGTGGAATGTTTTTCCTGCTCAACTTGTTTTGTGTGTAGCCATTATCCCTACAACTGAAAGCCTTAATAAAACCAACTCACTGTACTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2433991 lncRNA upstream 1343 32267662 ~ 32267975 (+) True G2128792
TU2433952 lncRNA upstream 1736 32267056 ~ 32267582 (+) True G2128756
TU2433933 lncRNA upstream 31419 32186853 ~ 32237899 (+) True G2128744
TU2433838 lncRNA upstream 76539 32157035 ~ 32192779 (+) False G2128668
TU2434006 lncRNA downstream 18694 32293074 ~ 32293316 (+) True G2128806
TU2434007 lncRNA downstream 22412 32296792 ~ 32297047 (+) True G2128807
TU2434009 lncRNA downstream 23359 32297739 ~ 32298064 (+) True G2128809
TU2434016 lncRNA downstream 35027 32309407 ~ 32309623 (+) True G2128816
TU2434017 lncRNA downstream 36028 32310408 ~ 32310764 (+) True G2128817
XM_021589929.2 mRNA upstream 45978 32201815 ~ 32223340 (+) True LOC110508995
XM_036966025.1 mRNA upstream 150243 32109770 ~ 32119075 (+) True si:ch211-13f8.2
XM_021589920.2 mRNA upstream 170522 32087652 ~ 32098796 (+) True LOC110508986
XR_002471382.2 mRNA upstream 214365 32053231 ~ 32054953 (+) False LOC110508984
XM_021589915.2 mRNA upstream 236458 32029589 ~ 32032860 (+) True LOC110508981
XM_021589935.2 mRNA downstream 88658 32363038 ~ 32368915 (+) False LOC110509002
XR_002471388.2 mRNA downstream 88658 32363038 ~ 32368915 (+) True LOC110509002
XM_036966101.1 mRNA downstream 100311 32374691 ~ 32403493 (+) False LOC110508222
XM_036966102.1 mRNA downstream 100311 32374691 ~ 32403493 (+) True LOC110508222
XM_021589937.2 mRNA downstream 306753 32581133 ~ 32589881 (+) False nmur1b
TU2433832 other upstream 213663 32053769 ~ 32055655 (+) True LOC110508984
TU2433828 other upstream 214227 32053769 ~ 32055091 (+) False LOC110508984
TU2433827 other upstream 214375 32053676 ~ 32054943 (+) False LOC110508984
TU2433826 other upstream 214375 32053769 ~ 32054943 (+) False LOC110508984
TU2433758 other upstream 321016 31945164 ~ 31948302 (+) False G2128614
TU2434599 other downstream 356909 32631289 ~ 32700844 (+) False pfn2l
TU2434597 other downstream 399423 32673803 ~ 32700844 (+) True pfn2l
TU2434698 other downstream 474548 32748928 ~ 32749568 (+) True G2129371
TU2434604 other downstream 509488 32783868 ~ 32803922 (+) False zbtb41
TU2434606 other downstream 510591 32784971 ~ 32803922 (+) True zbtb41

Expression Profile