RNA id: TU2434324


Basic Information

Item Value
RNA id TU2434324
length 264
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G2129041
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32305299 ~ 32305562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATTTCCTACAttttaacatacatttttttcaaaCAAAACTCTGCTACATTTAATCTCAGAGACCCTCAgcggtgaatgtatcaaaccagttatcgtgataagtgttttgttgttgtgcattctcctcaaacaatagcaaggtatttttttcactgtaatagctactgttaattggacactgcagttagattaacaagaatttaagctttctgcccatataagacatgtctatatcccggaaagttggctgttgtatACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434321 lncRNA downstream 7905 32297193 ~ 32297394 (-) True G2129038
TU2434304 lncRNA downstream 37267 32267707 ~ 32268032 (-) True G2129021
TU2434272 lncRNA downstream 61775 32240882 ~ 32243524 (-) True LOC110508996
TU2434161 lncRNA downstream 117816 32157032 ~ 32187483 (-) False asip2b
TU2434162 lncRNA downstream 117816 32157032 ~ 32187483 (-) True asip2b
TU2434327 lncRNA upstream 3848 32309410 ~ 32309627 (-) True G2129044
TU2434300 lncRNA upstream 5314 32310876 ~ 32311370 (-) True G2129017
TU2434343 lncRNA upstream 55780 32361342 ~ 32361579 (-) True G2129060
TU2434388 lncRNA upstream 69103 32374665 ~ 32375095 (-) True G2129095
TU2434392 lncRNA upstream 74239 32379801 ~ 32425441 (-) True G2129099
XM_021589932.2 mRNA downstream 13106 32280903 ~ 32292193 (-) True LOC110509000
NM_001160591.1 mRNA downstream 38281 32263643 ~ 32267018 (-) True dcnl1
XM_036966476.1 mRNA downstream 41869 32244116 ~ 32263430 (-) False ccdc39
XM_036966477.1 mRNA downstream 41869 32244116 ~ 32263430 (-) True ccdc39
XR_002471383.2 mRNA downstream 61714 32241792 ~ 32243585 (-) False LOC110508996
XM_021589933.2 mRNA upstream 6509 32312071 ~ 32332419 (-) False LOC110509001
XM_036966022.1 mRNA upstream 6509 32312071 ~ 32332419 (-) False LOC110509001
XM_036966023.1 mRNA upstream 6509 32312071 ~ 32332419 (-) False LOC110509001
XR_005040196.1 mRNA upstream 6509 32312071 ~ 32332419 (-) True LOC110509001
XM_036966281.1 mRNA upstream 156622 32462184 ~ 32514866 (-) True LOC110509003
TU2434271 other downstream 75085 32228406 ~ 32230214 (-) True LOC110508997
TU2434163 other downstream 140277 32062049 ~ 32165022 (-) False asip2b
TU2434159 other downstream 140277 32157032 ~ 32165022 (-) False asip2b
TU2434160 other downstream 140277 32157032 ~ 32165022 (-) False asip2b
TU2434125 other downstream 276741 32023058 ~ 32028558 (-) False LOC110508982
TU2435888 other upstream 1092985 33398547 ~ 33399084 (-) True G2130393
TU2436339 other upstream 1734644 34040206 ~ 34066665 (-) True G2130771
TU2436349 other upstream 1735876 34041438 ~ 34068073 (-) True G2130780
TU2436338 other upstream 1736007 34041569 ~ 34042565 (-) False LOC110509052
TU2436347 other upstream 1739128 34044690 ~ 34058270 (-) True LOC110509052

Expression Profile