RNA id: TU2546202


Basic Information

Item Value
RNA id TU2546202
length 606
RNA type TUCP
GC content 0.57
exon number 3
gene id LOC110521741
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 33686041 ~ 33710890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGTCTCATCTTCAGCTCGTGATCCCGTACATCCAACAGGTCACAGACACAGTGGAACTGAAGCCGCAGAGAACAACAAGGAAAGCTCGTGCTCTTTGCGGTTTTTCGGGACCTCCTTCTCCTAAGAAGCTCTGTGTGCGTCCCGGAGAACGCGCAATGTCCCCTGTGGTCATAGTGGACGGTACAGAGCCCGTGGACATCCGACCCCAGGAGCCCCACGGTCAGCAATCCGCTCCTTTACTGACTGACGTGGTATCCGCGCAGGATAGCCGTAATAGCAGCATGGCCAGTAGGCCGCTGGTCTCCCAGTCCCCTGCCTCTCCACTGGGCTCTGGGGGTATCGGGGGCATCCCCACCCCCGCCCAGCTCACAAAGACCAACGCCCCTGTACACATAGATGTAGGAGGACACATGTACACCAGCAGCCTGGCTACACTCACCAAGTACCCCGAGTCacgGATTGGTCGTCTATTCAACGGGACAGAGCCCATAGTGTTAGATAGTCTGAAGCAGCACTACTTCATAGACCGAGACGGCCATATATTCCGCTACATCCTCAACTTCCTGCGGACGGCCAAACTGCTCCTCCCTGACGACTTCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2546201 lncRNA downstream 279 33692097 ~ 33699601 (-) False LOC110521741
TU2546200 lncRNA downstream 12447 33686096 ~ 33687433 (-) False LOC110521741
TU2546190 lncRNA downstream 32478 33667136 ~ 33667402 (-) True G2226541
TU2546178 lncRNA downstream 34931 33662500 ~ 33664949 (-) False G2226530
TU2546177 lncRNA downstream 34931 33663349 ~ 33664949 (-) True G2226530
TU2546211 lncRNA upstream 16632 33719075 ~ 33721023 (-) True G2226562
TU2546243 lncRNA upstream 48590 33751033 ~ 33751236 (-) True G2226594
TU2546255 lncRNA upstream 57981 33760424 ~ 33760650 (-) True G2226606
TU2546294 lncRNA upstream 86964 33789407 ~ 33789659 (-) True G2226644
TU2546391 lncRNA upstream 96956 33799399 ~ 33799627 (-) True G2226740
XR_002473202.2 mRNA downstream 50953 33641220 ~ 33648927 (-) True lrrc41
XM_021599565.2 mRNA downstream 50954 33641220 ~ 33648926 (-) False lrrc41
XM_021599534.2 mRNA downstream 1208718 32488240 ~ 32491162 (-) True LOC110521732
NM_001124313.1 mRNA downstream 1446176 32249293 ~ 32253704 (-) True gs01
XM_021599531.2 mRNA downstream 1511392 32166645 ~ 32188488 (-) True LOC110521728
XM_021599573.2 mRNA upstream 19476 33721919 ~ 33728388 (-) True LOC110521743
XM_021599575.2 mRNA upstream 132939 33835382 ~ 33919803 (-) True LOC110521744
XM_021599576.2 mRNA upstream 626919 34329362 ~ 34379734 (-) True LOC110521745
XM_036969360.1 mRNA upstream 695873 34398316 ~ 34483574 (-) False LOC110521746
XM_036969359.1 mRNA upstream 695873 34398316 ~ 34483575 (-) True LOC110521746
TU2546157 other downstream 69986 33629122 ~ 33629894 (-) True G2226519
TU2544510 other downstream 1277833 32421732 ~ 32422047 (-) True G2224948
TU2542873 other downstream 2424737 31274720 ~ 31275143 (-) True G2223487
TU2540472 other downstream 4226205 29468643 ~ 29473675 (-) True G2221180
TU2538944 other downstream 5317605 28373296 ~ 28382275 (-) True lnx1
TU2546396 other upstream 106936 33809379 ~ 33809894 (-) True G2226745
TU2547162 other upstream 608699 34311142 ~ 34323655 (-) True G2227478
TU2547499 other upstream 839774 34542217 ~ 34542619 (-) True G2227801
TU2548951 other upstream 2096361 35798804 ~ 35799357 (-) True G2229175
TU2549451 other upstream 2510703 36213146 ~ 36214385 (-) True G2229647

Expression Profile