RNA id: XR_005040972.1


Basic Information

Item Value
RNA id XR_005040972.1
length 3155
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110521837
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 42294701 ~ 42312431 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCCACTCAACCACACAGCCACGTACTGTATAAGGAACATGCCCCACCCCCCATGAGAAATAGAGGTAAAGAGAGTGCGTTCGTGGCAGGTGTGTCTTCTAACAAACTCTATGGTCAAGTATAAAAACAGGCAAGTTTGCGGGCTCCTCCCCTGTGTTCTGGTCCTTCACGAACTCGGACAGGTGGGAATACACCAAACGCTCAGATGAAACTCCTAGACATTCGAAGAAAGTGTGTGCCAATGAAAACgctaAGAGGCGGATGTACATGCACCCAGCCAATGGGTACAAGATGTAAACAGAGTTTGCCCACCGCCAGAGAGGAAATTGCCGCGGCAGTGCCTGTAGACACTGTCCATATGGCCAAGTCAATGTAAAAAGACCCAGCCAACAAAAAACAAGTGGGGCCACCAAAATGTTTTGCCCGCGAGGTGGGGGGCCCAACCAAATCTTGCCTAGGCCCGCCAAAAGGCCAGGGCCGGCCCTGGATGCACCAAGCACACTGGTTTAGTGTGGAAGGCATGATATAGTCTGTGTACAGTGTTATTTTGGACTGCTTTGAGGGTGTGTGTTCTTTCTCAGCACCATGCTAAATGATGAAATTCAGAGTGGTGTGTGTGCAATACCCTCATCCTATGAATCACTAGTATTCTGAGTGTGATTTTTAGTCTCACAACAGTGGGGGGCTGGAGAAGGGGTTGCTCACTGCAGCCTACATTTGTTTTCATTTTAACATTTgaccatgttttttttgtttttttttccctcAGTAATGGAATGTACTGCAAATAAGTAACATTTTTCCCCCCTTGACAATGActtgaaatgtattttatttcagtgAATGTCTGAGGTAATAATGATAATATTGTTACTGTATCCAATTTATTTTGTTACTGTATAGATTTTCTGAGGGAGTATGTGAGATAGGCATCCAGCACACTCAAAAGTGCATTATAGGATCTCTGCCTTCAGGGTAAAACTATTGGAGACACAGCCAGAGGAAACTCATATCTCTTCATTTTCCCTAGGTATTTATCTTCCAAATGTACACATGTGAATTTGAGAACCATTTAAAACACAAAACACTCCACTGAACTGTCTGCCTCCCACTGAAAGGATGTGCAGTTAAAAATAGTGTGCAGGTCAAGGTTCATCTCTCAGCCTGGCTAGCTGGTTGTACATAAGTTGATGGAGCCAGCCTGTTAACAAACAAGCGGTGGACATCAACAGGCTCGCTCCCTGCTGTATTTACCAAGGAGCCTTCTGGCATCGCAAGGCTTCTCCATGTCTCCCTGCGGCTGCTCCCCCGATACACAGCCCTAATGAACCCTGGGCCTCTCATCAGCCCTGCAACACTGGGAGGCAGACCACCccgacacacgcacacacagaggcacatgcacacacacaggcaaaaatGCACGTACCcacagacatggacacacacaaatacacagacatGGACAGATACACAAAATTGCAATGAAGGTCTCCTCTAAAACCAGACTTTAGGCATTGTAGAAGACACCGCACAGAGTAGCCCTAAAGCCAGAGTGAGCTGAGGACAACCTTACATTGAAGTACCTGTGCGCGTGTGTTTAAATAAACCAGAGATGTTTAAACCTGTGTGacttgtgtgtatgtgggtggtaGGAGGTAGCGCTATACCCCTGGGCACTGGCTCCGAACCTGCCACACACACTTGCCCATCTCCGCTTGATGGGGCAAACAGCGTCGGGATGAGTGAGTGTGTCTGCCGCGGAATCCTGTTGAAGCCGCCTACTGGCGCGGCCACAATTTTCCCGGACAGGTGGGTCCCAAAGGCAAAGTGCTTAGTGATCAGGAGCAAACCCCGGCGAGCGGCTACAAGGAGATTCATGATCCCAACAGTGCTGAGCGGGACAGGTTCGCCGCAACGCGTCGTCAGCCCGGATGAGAGGCAAATTTATTGGGCAACGGCTATGAAGCGAGGCAGCGGAGCGTTGTGGCAGCGGAGCGTAGTGGCAACAACAGTTCTACACGGAATGGCGAAGGAAGGTGTCACAGTCATCAAGTACCTGGGCCCGCCTGCCTGCCACGGGTCTGGGAGTTTTGCCTAGGGACTAGTCTGTCACATTACACTAGATGCATTGCCATTCAGGGCCTGCGCGCTCCCGCAGCCTGACTATGAAATAGGCCAACTTTCATGTCTGCCTCATCTCTCTCCGTCGCCTCACTCCACTGATGGCACAGTTGGagagtttttttcttcttctgtgctGCAGCAGTTGGTGACTGAAATGCAAACACAGCAGCAGAGCACTCAGTCAGTCCCTCCGCAGCGCAAGCTAGACAGATATCTGGGAAACTCACAGTAGCAAGAAACAGGAAACTGGAAATGTCCCCCACTCTCTCCTGGCTTGTCGCGTTGTCAGGACCTGGTGCTGAATTTGCTCATGACATATAGGGCTATATTTGTGAATTCTGGATTCTTTAGAATATCTCAGGGAATGAGTTTAAATATTTAACCTATAATGAATATGTTACATTGTCCTGTGCAATAACTATTGTATTATTAAACATATAGAAATTAGTGTGATTACATATTGTGTTGATAGAAATTATTGTTATATTTAAGTAGTATCAACAGTTGTGTCAAGCATGATCCATATTGACTAAGGACCTGCATTTAGTTCCACGAAATACTGTATATCAATGATTTAAATCAAACTGTACAATGTGTCTGAACATTTTCTTTGTTccaaggactcttggaagattagtcaaAATGAggactaaaaaataaataaaatctcagACAAAATCTCAGACAAAGGAAAATGGAATGCAGTCCCATTTCACTGTGTCTGTTATTGTCTTGGCAGAACCGTAGCCcgtcgattccaggctgtgtcttGAGTGGCAGTCTGCCTGGGCAGTGGCTAGTAGTGCATTTATTTCAGGCTATTTGGACTGAGCCACTCTGACTGACCTTCAAGCTGAAGCATATGTTGTTCAGGAGCAGCTAGATCCTGCTGCGGTCCTGCCGTATGCCTGAAACAGGATCGCAGGCAGGGAGATGTCCAGTTTGAAGCCCTGACTGGCCAGAGAGGCTTCTATCCTCTCCAGCTGACAGGCcaagctctctccatctctttctcaaacacacaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2557951 lncRNA downstream 15132 42279350 ~ 42279569 (-) True G2237501
TU2557942 lncRNA downstream 21826 42272647 ~ 42272875 (-) True G2237492
TU2557927 lncRNA downstream 44093 42250359 ~ 42250608 (-) True G2237477
TU2557926 lncRNA downstream 44553 42249816 ~ 42250148 (-) True G2237476
TU2557917 lncRNA downstream 62009 42232211 ~ 42232692 (-) True G2237467
TU2558125 lncRNA upstream 196458 42508889 ~ 42509140 (-) True G2237670
TU2558128 lncRNA upstream 199901 42512332 ~ 42512538 (-) True G2237673
TU2558244 lncRNA upstream 393288 42705719 ~ 42706176 (-) True G2237786
TU2558257 lncRNA upstream 410410 42722841 ~ 42723305 (-) True G2237799
TU2558275 lncRNA upstream 435272 42747703 ~ 42747966 (-) True G2237817
XM_021599746.2 mRNA downstream 25843 42257424 ~ 42268858 (-) True LOC110521836
XM_021599747.2 mRNA downstream 27463 42257424 ~ 42267238 (-) False LOC110521836
XM_021599748.2 mRNA downstream 27547 42256238 ~ 42267154 (-) False LOC110521836
XM_036968925.1 mRNA downstream 63839 42100595 ~ 42230862 (-) True LOC110521834
XM_021599741.2 mRNA downstream 63842 42100595 ~ 42230859 (-) False LOC110521834
XM_021599751.2 mRNA upstream 214497 42526928 ~ 42534137 (-) False LOC110521839
XM_021599752.2 mRNA upstream 214497 42526928 ~ 42550858 (-) True LOC110521839
XM_021599755.2 mRNA upstream 244450 42556881 ~ 42616345 (-) False LOC110521841
XM_021599754.2 mRNA upstream 244450 42556881 ~ 42616724 (-) True LOC110521841
XM_021599772.2 mRNA upstream 751825 43064256 ~ 43081852 (-) False LOC110521848
TU2557952 other downstream 13339 42280756 ~ 42281362 (-) True G2237502
TU2555108 other downstream 2008419 40285654 ~ 40286282 (-) True G2234837
TU2554875 other downstream 2300787 39956915 ~ 39993914 (-) True G2234611
TU2554873 other downstream 2334600 39956915 ~ 39960101 (-) False G2234611
TU2553511 other downstream 3438010 38838906 ~ 38856691 (-) False LOC110521806
TU2558272 other upstream 430463 42742894 ~ 42743592 (-) True G2237814
TU2560366 other upstream 1969705 44282136 ~ 44283368 (-) True G2239635
TU2560804 other upstream 2417802 44730233 ~ 44733310 (-) True G2240022
TU2561135 other upstream 2657291 44969722 ~ 44970466 (-) True LOC110521015
TU2562200 other upstream 3562840 45875271 ~ 45885768 (-) True LOC110521929

Expression Profile