RNA id: XM_021599751.2


Basic Information

Item Value
RNA id XM_021599751.2
length 3000
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110521839
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 42526928 ~ 42550858 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGGAAAAAGAGTGAACGGTGCGCTTTACAATGGATTAAAAACCTGCACATGTAGATAGACACCTGGCGTGCGCATCCACTATGCGCCCACGGGCACGTCCAATATGCAATGGAATTGATAATGCACCTTGGTTTTCATTTTTAGTAGTTTATCAGGTAAACTAACGGGTAAGAATGTTGAGGTTGAGAACAGTGCTGCTGACTCCAATTAGATTAGATTATTGGATTGGCTGCAACAGATTATAGCGCGCCTGCTTCCAAGACGCAGTATACCGAGGAAGACGCGTATGATCTAACAATTTTACCCCTGTGGACTTCGACAATAATAAGGGGCAGCCATGCTGACCACCTTAATGGACGGCCTCCTCTGCTGCCTGACGGGGAAGTCGGCCAACGTTGTGGTTCCCATAGAAACCTCAGAACCCGCTGACGGCTACGAGTTTGTGGAGGTCAAACCAGGTCGCGTCCTGAGGGTCCGACATGTCATTCCGGAacgggaggtggaggaagagccCAGCGGGCCAGGGGGAAGCGTCCACTGCAAGAGGAAGATCACAGTGTATCGTAACGGACAGCTACTGATAGAAAACCTGGGGGATGCGGTTAAACAGGAGCGGTTACATGCTCCGAACGGAGAAGCAGAACCGAACTGTACAGTAGAGGTAGAGCTCGCAGACCCACCTTCCAATCCAACTCCCAATTCTGACACTAAAGTGGACAAGACAGGGTCAGTGATTGGGGCAGGGGGAGCAGCAACAGCTCCAGATCTGACCCAGCAGCCCCGGAAGCGACGGCGGAAGCCCAAGCGCACAGTGGTGATCGACAGCGAGAGGAAGATCACATCGTGTAAGGGGACACACGCGGACGTGGCACTGTTCTTTGTGCACGGTGTGGGCGGCTCGCTGGACATCTGGGGCAGTCAGCTGGACTTCTTCTTCCGTCTGGGCTATGAGGTCATCGTGCCAGATCTGGTAGGTCACGGGGCGAGCTCGGCGCCCCAGATCGCGGCGGCATACACGTTCTATGCCCTGGCCGAGGACATGAGGGCCATCTTTAAGAGATATGCACGGAAAAGGAACATTCTCATCGGACATTCTTATGGTGTGTCATTCTGTACATTCCTGGCCCATGAGTACCCGGACCAGGTCCACAAGGTGGTGATGATAAACGGAGGAGGCCCCACAGCCCTGGAGCCCAGCCTTTGTTCCATTTTCAACCTGCCCACCTGCGTCCTGCactgcctctccccctgcctctcctggAGCTTTCTCAAGGCTGGATTTGCCCATCAGGGTGCAAAGGAGAAGCAGCTGTTGAAAGACAACAATGCTTTCAACGTGTCCTCCTTCGTGCTGCGTGCCATGATGAGTGGCCAGTACTGGCCAGAGGGCGACGAGGTGTACCATGCAGAGATCACTGTGCCCATCCTACTGGTGCACGGCATGTACGACAAGTTTGTGCCCGTGGAGGAGGATCAACGCATggcagagaTCTTGCTGCTGGCCTTCCTGAAGATAATCAATGAGGGCAGTCACATGGTGATGATGGAGTGTCCCGAGAGCGTCAACACCCTCCTGCACGAGTTCTTCCTCTGGGAGCCAGACTCCGCTCCTAAATCTAAACCACGATCTGAAACCGCCAATGCATCCAACGGGGGAGCAACTTCAGAAAGCCAAGCCAAGAATAAGTAGCCCATAGAAGGATGGATGTGTGTTATTGACTCCAATCAAAGCTTGCACAGCCAGTGATGTGTACTGTCTACCATGGCTGGTAGTGCTAGGCGTGTCTCCTCGGGTGCAGGGAGCTGGTTTGAGTCGGTTTgaactgggctgggctggtttaAGATTGAGATTTGAGGAGGTGGAACACAGTACACAGGGACAGATGGGTCTATATTTGGTCTAAGTCTGAGCCACTGCACTACATCAGAGGAAGGACAAGAGGGATGcgagggagggtgaggagggacgGATAGATGGACGTCAATGACGTTGACCGTGGAGGTCTATTGTATTGTTCTGACCTGTTCTGATTGAGTGACTGATCCCTGACTGTGCCTTGGGGTGGCGTGGGGCTGAAGAGGTGCTGagttgtagaggtggacctgatAATGTTATTGGTTTTGTGTGTTGCGTGTGGTACACCTCTAGTTGCACAATGGGTGGAAATGTCAAAACAAGGGTGGAtcagagagggaagagaatgtATTGGAAGTGGTCAAGTCACACAAGACAATAACTAGCCAAGAAGAACGCTTGTTATACTACTCAAGCCAAAGGTTAGCCAATGTTTGTGACAAGCAACACCAGAAccaactttcttttttttctgaccactttttttttttctgaTCACATTTGAATATTTGAAACTTCACAACATTGTGACTCAAGTTGAATGAGACATTTGAAATGATGTTCGACCATCAATGCTGCTTTTTGAGAACGAGCCAACTCCAATGTATTTAAATGCATTATTCAAACGCACTTCCCTGTCAGAATCATTGCAAATGACAAGCCATTTCTTGACATTGACAATGTTTTGCTTTGTCTACTGAGAAACAACTTGAGGGACAGGGGAAATACCAATGTGTGACTGTTTTACAAAGTCTTCTTGTGTATTTTATGGGAAAAACAAAAATGTTTCCTTTGGCTGCTGGTTAACTGGGAAGTACAAACTGGTAGATATCAATGTGTGTTTTGGGCCCTTTTTAGAAGGATTATTTTTCTTGCTGTTTATTCATATTCCTCTACAAAACTATGCTGAACAATGATTGTTTACCTTTTTTTCAGGTAAAAGTGATATAAGCTATGAAAATGTTTATTGGTACACCAAAATATGGTACACCAAAAATGTTTGTAAAATCGGAGAATTCTTCAATACCACATAGCAAGCTCTCCGTCATGTaactactgaacaaaaatgtaaacaaaaatgtaaagtgttggttccatgttttatgagctgaaataaaagatcccagaaatgttctatatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2558128 lncRNA downstream 14390 42512332 ~ 42512538 (-) True G2237673
TU2558125 lncRNA downstream 17788 42508889 ~ 42509140 (-) True G2237670
TU2557968 lncRNA downstream 214667 42307540 ~ 42312261 (-) True LOC110521837
TU2557951 lncRNA downstream 247359 42279350 ~ 42279569 (-) True G2237501
TU2557942 lncRNA downstream 254053 42272647 ~ 42272875 (-) True G2237492
TU2558244 lncRNA upstream 171582 42705719 ~ 42706176 (-) True G2237786
TU2558257 lncRNA upstream 188704 42722841 ~ 42723305 (-) True G2237799
TU2558275 lncRNA upstream 213566 42747703 ~ 42747966 (-) True G2237817
TU2558732 lncRNA upstream 220131 42754268 ~ 42783111 (-) False G2238226
TU2558726 lncRNA upstream 244286 42778423 ~ 42783111 (-) False G2238226
XR_005040972.1 mRNA downstream 214497 42294701 ~ 42312431 (-) False LOC110521837
XR_002473220.2 mRNA downstream 214505 42299556 ~ 42312423 (-) False LOC110521837
XR_005040973.1 mRNA downstream 214506 42294702 ~ 42312422 (-) False LOC110521837
XM_021599746.2 mRNA downstream 258070 42257424 ~ 42268858 (-) True LOC110521836
XM_021599747.2 mRNA downstream 259690 42257424 ~ 42267238 (-) False LOC110521836
XM_021599755.2 mRNA upstream 22744 42556881 ~ 42616345 (-) False LOC110521841
XM_021599754.2 mRNA upstream 22744 42556881 ~ 42616724 (-) True LOC110521841
XM_021599772.2 mRNA upstream 530119 43064256 ~ 43081852 (-) False LOC110521848
XM_021599771.2 mRNA upstream 530119 43064256 ~ 43081865 (-) False LOC110521848
XM_021599775.2 mRNA upstream 530119 43064256 ~ 43082034 (-) True LOC110521848
TU2557952 other downstream 245566 42280756 ~ 42281362 (-) True G2237502
TU2555108 other downstream 2240646 40285654 ~ 40286282 (-) True G2234837
TU2554875 other downstream 2533014 39956915 ~ 39993914 (-) True G2234611
TU2554873 other downstream 2566827 39956915 ~ 39960101 (-) False G2234611
TU2553522 other downstream 3670237 38838906 ~ 38856691 (-) False LOC110521806
TU2558272 other upstream 208757 42742894 ~ 42743592 (-) True G2237814
TU2560366 other upstream 1747999 44282136 ~ 44283368 (-) True G2239635
TU2560804 other upstream 2196096 44730233 ~ 44733310 (-) True G2240022
TU2561135 other upstream 2435585 44969722 ~ 44970466 (-) True LOC110521015
TU2562200 other upstream 3341134 45875271 ~ 45885768 (-) True LOC110521929

Expression Profile