RNA id: XM_021599754.2


Basic Information

Item Value
RNA id XM_021599754.2
length 8020
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC110521841
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 42556881 ~ 42616724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGTCGTTCTATAAAAAACAATTTGCTCTCTGGCTGTTTGCAGAGGTCAGAGAAAGTGAAAGGTGTATTTATTGAAATGCTCTCTTGGAGGGCAAGGAGGAAAATAACGATATTTTATTTCCAGTGCATGTGTGTGGTGGCTGGCTGTAGCCTACTGGCTGTAGTCTCCCCTTTTCTCTTTGTCCCTCCTCGATACTTAATAATCAACCGAGCGCTATCCATCTGCTGCAAACCAGGATGAGCCACCAGCACAACAACCATCACTTCACGTTAatttaacctctgtctctctgacccaCCGGTCTGTCGCGGTCCATGCTTTGCCTGCCTGAGATGCGATTTCATTCTCCCTTTTCCCGGAGAGTATCGTCCGTTACACCCCACTGAAAGAGCATGCCTGAGACCGGGGCGACGGGAGCAGCAGCTGCAGCTGCCAGTATCAGCTCCTCCGACAGCAGAGACGGCACCGAGGGCTTTTGGCACAGACACCGATCGCAACGCGAGGGAGAAAAGACAGATCCAAGTTCTGCCTCCTCGCAGCAAACGTCCTCCGGTGTACTGGataAGTTATTTGGGAAGCGGCTGCTGCAGGCTGGGCGGTACATAATGTCTCATAAATCCTGGATGAAGACCGTGCCCACTGAGAACTGTGACATCCTCATGACTTTCTCAGaccagacagatgaCCACACGTTGCTATGGCTACTGAACCACCTGCGTCTGGGCATTCCGGAACTCAACATCCAGATCCGACATCACAAACGCACCCGCGTCCATGCCTTCTTCGTCACAGCAACCTATGAGAAtctgtTGCGTGGGGCAGAGGAGATGGGTCTGAGAAAAACAGTGAAGCCAGAGTTTGGGGGAGGAACACGCAGCTTCTCCTGTGAAGAAGACTACATCTATGAGAACATTGAGAGTGAATTATGCTTCTTCACATcacagGAGAGGCAAAGCATCATCAAGTACTGGCTCGACAATCTACGTGCCAAGAATGGAGAGGTGCTTCACAACATACAGTTCCTGGAGGGACAGCCAATCATCCCAGAGCTAAGTGTGCGGGGCGTGATCCAGAAGGTGTTTCCGCTCCATGAGCAGAGGATCCTCAGTCAGCTGATGAAGTCCTGGGTGCAGGCCGTGTGTGAAAAACAGCCACTAGATGATATTCATGATTACTTTGGGGTGAAGATAGCCATGTACTTTGCCTGGCTGGGGTTCTACACCACATCTATGCTGTATCCAGCTGTCATTGGCTTTGTGCTCTGGATTCTGACGGAGTCTGATCAGaCAAGTCGTGATATCTGCTGTGTAGTGTTTGCTCTGTTCAACGTGGTGTGGGCCACGCTGTTcctggagaggtggaagaggaggggggCGGAGCTAGCCTATAAGTGGGGTACGCTGGATACCCCTAACGAGTCCCTAGAGGAACCACGGACACAGTTTATGGGCGTAAAGCGGTGCAGTCCCATAACAGGCTGTGAGGAGTTATACTACTCTccgtggaggaggaggatgttcaGGTGGCTGGTCAGCCTGCCCATCTGTATCCTTTGTCTCTGCTTTGTCTTCCTGGCCATGCTCATCTGCTTCGAGCTGCAGGAGTTTGTGATGGGGATCAAGGAGGTACCTCGCTTGGCCAGGTTCATCCCTAAGATCATGCTGGCCATCACTGTGACCGCCTGTGACGAGGTGTACCGGAAGATAGCCTGCTGGCTCAACGACATGGAAAACTACAGACTCCAGAGTGCCTATGAGAAAAATCTCATCATCAAAATGGTTCTTTTTCAGTTTGTAAATTCTTATCTCAGTCTTTTCTACATTGGATTCTACCTCAGAGACATGGAGCGTCTGAAAGAGCGTCTGACTACCTGTGGATTTGGACATTTGACCTATAAGATGCTGGCCACCCTTCTGATCACCCGGCAGTTTGTCCAGAACGTGAAAGAGGTGCTGCAGCCTTACCTGTACGAGCGCCATAAGCTGGGCGAGCTCACACTGCACGGCGTCTGGGACCTGCTCCTCTCAGCCCTGCTCAAGTACTGCCGGCTGGCCGCAGGAAAGGCCCAGGCTTCACCCACCGACCAGGCCGTACCGAGCCACGGCCTGAGGGGAACCAGATCCGGGGTGGGACAGCCTGGCCGCAGGGAGAAGAAGTGTCTGAACGGGGGATGTGGGGTGCCTGatgaggaggaaagggagagggaggagggagacagcggGAGGTTCAGTGAGGGAGAGAACGAGGAGTTGATAGACTGTGGCCTGAAGCTGAGGAAGGTTAGCTTCATAGAAAAGGTGGACAGGAAGTCGTCTGGAGGGGGCTGCGTCCCTACAATAGAGGATAGTTTCCTGGAGGATGGCAGCCCCACCATGGTGGAGAAGGGGATGGACCCGGCCTTGGTGTTCGAGACGTATGATGATGCCGATGTCAATGAGATGAAGGACACGGGTGGTTTGGCCAATGAAAATGTGGCAGCTGCCCCACTGCCTTCTGGGCCAGAGAGCACGGTGAGGGTGCGTCATCACAGAATGCAGAGGAGTTTGGAGAGACTAGACTCTGAGACCAAGAGGGAGTCGTGGATCGACCCCCCAGAGGAGCAAGAGAGTACGATTCTGGCACAGGCTGAGATTGAGAGCTGCATGCAGACTTATGAgGACACCTTCCAGGACTACCAGGAGATGTTTGTCCAGTTTGGCTATGTGGTTCTCTTCTCCTCAGCCTTCCCCTTGGCGGCCATGTGTGCTCTCATTAACAACATCATAGAGATCCGCAGCGACGCCTTAAAGCTCTGTACCGGCCTGCAGAGGCCCTTTGGTCAGAGGGTGGAGAGCATCGGACAGTGGCAGacagCAATGGAAGCCATGGGTCTAATCGCCATCATAGTCAACTGTTACCTGATTGGTCAGTGTGGTCAGCTGCAGCGACTCTTCCCCTGGCTCAGCCCTGAGATGGCCATCATCTCCATTGTCATCCTCGAAcaCTTTGCCATCCTGCTGAAGTACATCATTCACGTAGCGATCCCAGATATCCCCAGCTGGGTAGGAGAGAAGATAGCAAAACTGGAGTACCAACGCAGGGAGGCCTTTAAGAGGCACGAGCGGCAAGCACAGCAACACTATCAACAGctacagaggaggaagagagaggaggaggagaggcagaggcaggcgGAGTATCAGGCTcgcagggaaagggagagagatgaggggaaggACTCCTCCGGGGGAGACCACCACCACGACAAGAGCCATAGGGGGAAGTCCCGCActggggggggtggagggggggacaAGCCCAAGAGGCCCAGCTCCCTCTTGGCCAACAACAACGTGATGAAGCTCAAACAAATCATCCCCTTACAGAACAAGTTCTCCTCAAGCAGCGCGCGCTCCCCTCAGTCTCCCACTGGAAACGAACCCAAGCTCCCCGGGTTCcttagcttcaagttcctcaagTCGCCCGAGAATAAGAAGGAAGCGGCGGCGACTGCTGCTGCAGTAGCGGCAGCCACGGCAACGAATGCCACGATGTCTGCGACCGTCCCAAGTGGTAACCAGGAGTGGTCTCAGTCGCCAAGCAAGTCATTCAACCCGGGGAAACTGTTTAACTTTGGCAAGTCGGAGGGGGGCTCCTGTGTGAATGGGACCCAGTTACCCCGACCAGGAGAGGGGTCCCAGGTGTCTGACAAACAGCCCACCAAGTCTGACCTGAATGGGGTGACGGGCGAGAGCCGTTCACCTGGAGGGGACGTAGAGGAGAACGAACACCACACAGACTCCCCGGACCGTAAAGTCTAGTCTCTGGAAAGAGATAATAAACTGCTGTGAGAACTTAACTTGATATATCTACTACAAGGAAAAAATAAGTGGGGTGAAAAGGCCAAGCCTCTCCATGCTGTCTGAGGTTGTGTATGTAGACACTGCCTAGAGGCTGTGAGGGGAATGggctgatggtgatggtgatgaaaaCATAACCCGTGCGCGcttagagacacacacatacctcaCTTTTGTCTGCAATACATATAGACATGCATGAGCTGTGTTTCTAAAActttttttgggggaaaaagggAGAGCAGTTTATCTTGATTTATTCTCATCTGAAAATGTAAATCATCTTGGTGGCCATCTTGCCACTGAAACATAATAGCCTGGTTTTGGGGAGAGAAGGAAAAACATTTATCAAAGGCATAATGAGACCTTTCGTAGCATCCACAAAATGGTCGCCTGATCTCATACAAATGTTGAACTATGAAGGCCTATCAGCTTTTCTACTTAAACGAATCGGCTTTGCTAGCCGTGCAATATCAATCAGTGTTTAAAATTTGAGCAGTACTGCAAAACACGTGAAGTTCATTCTCATCAGCCTCATCTCCCATTTAAAAACATACATGAAGTGCCATGAGCTTTATTTACAAAGCAAAAAGAACCACCCGAGCTTAGTATATACCTCCCAAGAAAACAACAGGAATATCTGAAGTGTATGTCTGACAGTGAGAGTGGATGTTGTGAAAGGCCGAGATGAAAGTCGTTTGATAAGAGACAACCAACACATACTGTCTCGTATCAATATGTGTtctagggagagaggaaaagaaagagagggagagaatgacagTTGTTTTGACTGATGCCTGCCCAGGAAGCAGAGTCCGATGAAGGAAGATGCCACAGGATGTTGACATGGATGTGTGTGTAGactagacagtatacagtatgtgctaTGGAGAGTTtgggttactgtagtctactgtgtgCCATTCTAATATCTCCCCATTCAAGccggtagagagagacattatagacagtataCTAATCATGGCACTCCATTTCAACACAAAGATCTGACTAGACTagtgagatagaaagagagaacatTTGCACTAAACCCCGAAGTACTGCACTGAGACAGCAGAGCTTGTTCTGCAGGTGTAAGGAAGGACCATACCAGCCTGGCTCATAACACAACCTAACACATGCAAACACTTGCTTTTTTTATCGCTAGTATTTTATACTGATGCTGTTGTTATTTCATCTGGATGGCTGCTGATCCCAATCATTCGAGAGCTGACATATTTTATTTCCCCTTGTGTCTTTTGGGATATATGTCATTTGGGATGTTGCCAAAGCAGTACCTTTCTGAGTACACTGGCATGTGAGAACATAGTTACATTTCTGGAGATCCCAGATTTCTAAATTCCTTTTATAAGCAAATCCAAAGGGATTATTCAACCATCTTTATTTTCTCTAATGTGGCCAGAGGATGGTGCCAGAGAACAAGAAAGTGGTTTATACGTCTCTAATTTAGAGTACAATGGCATTGTCCTTGGATACTGATCAGCAGTCAGTTGTGTGTCCTCCACCCCTACTGTTAAATTTTGGATTTGGGGAAGGTAATCTGACATTAGATCTGTGCCTATAAACTCATAGTACATCCAGTCTTCATTGAAAAGAAGAACCACTGCACTTCACAGCAGAGATTAAGCACAGAGACATGCAGTAAACTATCTTTGCACCTCCACGTCATCCTCTTTGGCTAGGATCTTTGCAATAATATCGTATTGGAGGGACATAGAGGCACAGCCATATACACTAGTCTTCTACTGGTCCATGCCTTAGCCAACTGCATCTCTTGTTCCACCACCCACATTTTTCGATCTCCTCCACCTGACCTGGCTTCTCAGTGTGGGTATTaacatctcatctctcctctctccatctgggCTGAACCAGACACACCTGTCTCCCTTCTGAAATAGGAAACCTAATCTAAGGAAGCTTCCCTGGTACACTgtccttttcatctctctctgcttTAAATATGAGACGAGGTTACCTAAAATGCCTATCAAATATGAATTTTGGCAAAAACATGCATCAACTTTCATTTTGCATGGATTGCCTTGCTGTAATTATACAAGCTACAAAATAGTGTCATGCTTCTGCAATGAAACTCAATATGGTATTTCAACctgatctcatagactagacataacatagtacaTATACATTCGGGACACTCAAGTTAGTATGATATATTGTGTTTAGTATGGTTACAtatctcatcatggacaatttATAGTTAATTAGCAACtatttagctactttgcaactacttagcatgttagctaacccttcccctaaccctttaggctaacccttcccctaatctTAATCCTTTTAgcaaaccctaaccctttaacctaactcctaaccttaacccctagcctaactAATGTTAGacacctagctagaatttgtaacatatacatttagcaaattcgtaacatattggacgttttgcaaatttgtaacatataatatgaattgtaatttgtaacatatcatacaaagtTGGTGATGGAcatcacaaattaatacataccatacgataTCATACTAAGTGGAGTTTctcagatttacgtacagaatgataagaaatgctctgagaccaggttgagtaTTTTCATGCATATGATGGAAACAATGAGTATTGAGCTCTGACTGACTGAACttgtactggtagtagtagttacaTGAGAATGTATTTGAACTGAAAAGGCACTTCGAGGCAATAAGGAAACAGAAAGAGCAGTTGTTTGTGACCTTATTACATTTCCCCCTCACTCTACAGCCATTAAGTAATTATGTACAAATAACAAGGAAACCATTTGGTTACTATCATCGTCACCATACATTTGTGAATAATGCCAAATAACTAGGCCACGGATGAGACAGGATTTCAATTTTGTTCTCTTTTACTGCAGCTGCTTAGTCGGACACATTTGGAAGTGTTTGATCAGGTTTTCTGTCATAGACTATTGTTAGTAACAGTCATCCATGGTACACCTGCCTGCCGCAGCTCTGGAACCAGACTAGGTTGGTTTCTTTGTTTGTTTCACCTTTGATACAGGTTGTATCTTCATAGTTCTGAATGGCTTCCTCTATTTCCCTGATCTGAAAGAAATGGACAAGCTAAAGCAAATTCCCAGCAGGCAACTAACATGTTGCTTTTACCTGTCTGGTATTTTCAGATAAGTGCCGATGatgggaaaggagacaaggagctCGGTCCATGTTAGTAAGACCATCGAGATGCAGCCTGCCTTGGGTCAGTGGCCGTCCATGTCCTTTGGCCTCACTAAACACGTTGACCCTTTTATCAGACAGAGCTACTTTAGAAGTAGTGAAATGGTTCATGTCAGTATCAATGCAACTATACGTATTTTAAAACTGTAAGGAAGTACTCTGAAAGAGTTGACCTTTTGATGTTCTATCGTTGCACTGCTTAGTTACAAATATTACAAGGGTTACGAGAAGAGAACTGAGGCCGTGTTTAGACTTGACAGTTGACTTGACAGTTCAGTTTAATATCCGATCAGAGTTCTGGATCATGGATTTACGAATGCGTCGTGTCTACACCTATATTGAAATGTGTCTACCGTGTCCGGATTCCCTTATCCCACGCTACATTCAAATGCCAGTATGCATTCTACAAATGGTGGAATAGGCCAAATATGATACCAACACAACAACTGATGGcagtagctaactagccagctaacctctgtagctagccagcaagcaACGCTAAAGGAATTGCAAACAGGTTAGCTAGCTGGCGAGCATTTAGGAGGCCAGCAAACACATTCCTTGCACGCTAGGAATGTATTTCCTCCAACTTTATAATGAAAAGGTCCCTCTCAGTACCAAAACGTACGTTTTCTGGAGACTTGTGGGAGGAGTGCTGTTGATGCCGTGGAGTGGAGGTGTACAGGTGTACTGTACAGCTACCAGTATATAGAATTGTTCCCTTAAACCTCTTAactaaattaaaaaaaacattcacaACAGCCTCACTGACAAGACATCATGTTCTCTTCCAATGTACCACTGTACAAAAAAAATCTTTATTTTCAAGAAAAATATAATACTGGGAAATGggattattttattttgtcataTTTTTTTGTAAGATTTGAAAATagataataaaacaaatgtaaactGAAA

Function

GO: NA

KEGG:

id description
K19502 ANO8, TMEM16H; anoctamin-8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2558128 lncRNA downstream 44343 42512332 ~ 42512538 (-) True G2237673
TU2558125 lncRNA downstream 47741 42508889 ~ 42509140 (-) True G2237670
TU2557968 lncRNA downstream 244620 42307540 ~ 42312261 (-) True LOC110521837
TU2557951 lncRNA downstream 277312 42279350 ~ 42279569 (-) True G2237501
TU2557942 lncRNA downstream 284006 42272647 ~ 42272875 (-) True G2237492
TU2558244 lncRNA upstream 88995 42705719 ~ 42706176 (-) True G2237786
TU2558257 lncRNA upstream 106117 42722841 ~ 42723305 (-) True G2237799
TU2558275 lncRNA upstream 130979 42747703 ~ 42747966 (-) True G2237817
TU2558732 lncRNA upstream 137544 42754268 ~ 42783111 (-) False G2238226
TU2558726 lncRNA upstream 161699 42778423 ~ 42783111 (-) False G2238226
XM_021599752.2 mRNA downstream 6023 42526928 ~ 42550858 (-) True LOC110521839
XM_021599751.2 mRNA downstream 22744 42526928 ~ 42534137 (-) False LOC110521839
XR_005040972.1 mRNA downstream 244450 42294701 ~ 42312431 (-) False LOC110521837
XM_021599772.2 mRNA upstream 447532 43064256 ~ 43081852 (-) False LOC110521848
XM_021599771.2 mRNA upstream 447532 43064256 ~ 43081865 (-) False LOC110521848
XM_021599775.2 mRNA upstream 447532 43064256 ~ 43082034 (-) True LOC110521848
XM_036968944.1 mRNA upstream 516549 43133273 ~ 43134588 (-) True LOC118945796
XM_021599780.2 mRNA upstream 523994 43140718 ~ 43144812 (-) False LOC110521850
TU2557952 other downstream 275519 42280756 ~ 42281362 (-) True G2237502
TU2555108 other downstream 2270599 40285654 ~ 40286282 (-) True G2234837
TU2554875 other downstream 2562967 39956915 ~ 39993914 (-) True G2234611
TU2554873 other downstream 2596780 39956915 ~ 39960101 (-) False G2234611
TU2553522 other downstream 3700190 38838906 ~ 38856691 (-) False LOC110521806
TU2558272 other upstream 126170 42742894 ~ 42743592 (-) True G2237814
TU2560366 other upstream 1665412 44282136 ~ 44283368 (-) True G2239635
TU2560804 other upstream 2113509 44730233 ~ 44733310 (-) True G2240022
TU2561135 other upstream 2352998 44969722 ~ 44970466 (-) True LOC110521015
TU2562200 other upstream 3258547 45875271 ~ 45885768 (-) True LOC110521929

Expression Profile