RNA id: TU2538750


Basic Information

Item Value
RNA id TU2538750
length 490
RNA type TUCP
GC content 0.52
exon number 2
gene id G2219602
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27863404 ~ 27864068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATCACTACTGAACTGACCACTGGTCCTGAAGCCAGTATTACTTCAGCTCATCATGGTAGATGTAGCTGATCTGAGGACAGCTGAGAACCTCTACCGTGCGGTCTCCTCCTGTACTCTGACACCGCTGCTGGAGGTTCTAGATGTATTGCCTCTTTGCTTGCCCCCCCCCCTTTCAGGTCAGAGGACATGCTTGGCTGTGAAAAATGACCTATTACAGACTAAAGCTCTGTTGTACTCTCATCAGCAGAGAGGCACATACTCATTCGCTGCTCTCTTCTACTtaattctctcttctccccctcttggctctctcttctccccctcttggctctctcttctcctcctcttggctctctcttctccccctcttggctctctcttctccccctcttggctctctcttctccccctcttggctctctcttctccccctcttggctctctcttctccccctcttggctctctcttctccccctcttggCTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2538748 lncRNA downstream 10117 27853009 ~ 27853287 (-) True G2219600
TU2538747 lncRNA downstream 10702 27851811 ~ 27852702 (-) True G2219599
TU2538746 lncRNA downstream 12447 27850629 ~ 27850957 (-) True G2219598
TU2538744 lncRNA downstream 13892 27849296 ~ 27849512 (-) True G2219596
TU2538723 lncRNA downstream 43123 27820046 ~ 27820281 (-) True G2219579
TU2538770 lncRNA upstream 85228 27949296 ~ 27949507 (-) True G2219622
TU2539032 lncRNA upstream 506788 28370856 ~ 28371089 (-) True G2219863
TU2539564 lncRNA upstream 676856 28540924 ~ 28541160 (-) True G2220364
TU2539571 lncRNA upstream 685863 28549931 ~ 28550149 (-) True G2220371
TU2539599 lncRNA upstream 714975 28579043 ~ 28579385 (-) True G2220395
XM_036969022.1 mRNA downstream 64051 27685359 ~ 27799353 (-) False LOC110521652
XM_036969024.1 mRNA downstream 64051 27685359 ~ 27799353 (-) True LOC110521652
XM_036969023.1 mRNA downstream 64052 27685359 ~ 27799352 (-) False LOC110521652
XM_021599394.2 mRNA upstream 109076 27973144 ~ 27983258 (-) True LOC110521660
XM_036969379.1 mRNA upstream 121449 27985517 ~ 27989064 (-) True LOC110522776
XM_036968832.1 mRNA upstream 169098 28033166 ~ 28051674 (-) False LOC110521662
XM_021599396.2 mRNA upstream 169098 28033166 ~ 28051936 (-) True LOC110521662
XM_021599399.2 mRNA upstream 233975 28098043 ~ 28165253 (-) True LOC110521664
TU2538742 other downstream 18003 27844874 ~ 27845401 (-) True G2219594
TU2537466 other downstream 683016 27173253 ~ 27180388 (-) True LOC110521640
TU2537095 other downstream 972793 26888889 ~ 26890611 (-) True G2218118
TU2536765 other downstream 1521909 26268346 ~ 26341495 (-) True G2217824
TU2536746 other downstream 1626006 26236685 ~ 26237398 (-) True G2217805
TU2538944 other upstream 509228 28373296 ~ 28382275 (-) True lnx1
TU2540472 other upstream 1604575 29468643 ~ 29473675 (-) True G2221180
TU2542873 other upstream 3410652 31274720 ~ 31275143 (-) True G2223487
TU2544510 other upstream 4557664 32421732 ~ 32422047 (-) True G2224948
TU2546157 other upstream 5765054 33629122 ~ 33629894 (-) True G2226519

Expression Profile