RNA id: TU2536765


Basic Information

Item Value
RNA id TU2536765
length 912
RNA type TUCP
GC content 0.50
exon number 2
gene id G2217824
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26268346 ~ 26341495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGCCTTCCCTAAGTGCACTGGCAGATCCCCAGTGCTGAAAGTGAATGTGCCACGTCGAGGCTGGATACTCTGCTCGCTCGGACGCAGCCCCTCGgaaccccgacacacacacacaaggacctGACACACACTGGGCCGAGACGCGACCAGAACAAGACCCAGACCCATAGAAGAGGACAGccagtgtgtgtgcacatgtgtgagTGTGACCCCTCACCCGTCACTCAGGacgagaaaggagaggagacaatgAGAATCTTTTACCTAGTTTGTCAACCACATTTTGGACGGGTGAAAAACGAGATAAAAGAAAGGAATGAGAGAAGAAGGAAGATAAAACGTAGAGAGCAGAGGAGACATCTTtctactcctccacctccttcaaAACTTTGCACAGATGaaaaaggaaagagaaaggaagggagagagagaaataaagaagagAGCGAGAGTCCTGTTCCGTCATCCCAGTGTTCAGACTACCTGTTCAGGGTCTTACTGGTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGAATTgcttccatcactctctctcaaacacacacacaagcatatacACACACGCATGAGCACATTCACACTGGGGACGAGATGTATGAGTTTGTCTTTGCTGGTTTGTCTTTCGCTGTCTGCTACTACGTTGTTCTTTGTGTGTTTTGAAAGCCTAGAAGCCTGCTATATTTGTCAGTGctcagtacgatgatgttgtgacacaccgccccagaccatgatggaccctccacctccaaattgaccccgcttcagagtacaggcctcggtgtaacgcctGTGGGATTTGATAAACcagaatccgaccatcacccctggtgagacaaaaccgcgactcgtcagcgaagagcactttttgccagtcctgtctggt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2536736 lncRNA downstream 16268 26250113 ~ 26252078 (-) True G2217795
TU2536695 lncRNA downstream 33881 26180372 ~ 26234465 (-) True G2217763
TU2536741 lncRNA downstream 37681 26230324 ~ 26230665 (-) True G2217800
TU2536648 lncRNA downstream 115835 26148105 ~ 26152511 (-) True G2217720
TU2536622 lncRNA downstream 209895 26058063 ~ 26058451 (-) True G2217694
TU2536783 lncRNA upstream 32263 26373758 ~ 26380496 (-) True G2217838
TU2536954 lncRNA upstream 226349 26567844 ~ 26618056 (-) True G2217991
TU2536970 lncRNA upstream 266028 26607523 ~ 26607926 (-) True G2218006
TU2537035 lncRNA upstream 378752 26720247 ~ 26795798 (-) False G2218063
TU2537034 lncRNA upstream 380559 26722054 ~ 26795798 (-) False G2218063
NM_001165132.2 mRNA downstream 135409 26127536 ~ 26132937 (-) True LOC100305228
XM_021599298.2 mRNA downstream 294433 25971768 ~ 25973913 (-) True LOC110521616
XM_021599297.2 mRNA downstream 294441 25971768 ~ 25973905 (-) False LOC110521616
XM_036969397.1 mRNA downstream 325982 25938771 ~ 25942364 (-) True LOC110521615
XM_021599295.2 mRNA downstream 326100 25938771 ~ 25942246 (-) False LOC110521615
XM_021599310.2 mRNA upstream 25393 26366888 ~ 26370050 (-) True pigc
XM_036969396.1 mRNA upstream 34830 26376325 ~ 26445062 (-) False LOC110521628
XM_036969393.1 mRNA upstream 34830 26376325 ~ 26445063 (-) False LOC110521628
XM_036969391.1 mRNA upstream 34830 26376325 ~ 26445065 (-) False LOC110521628
XM_036969395.1 mRNA upstream 34830 26376325 ~ 26445065 (-) False LOC110521628
TU2536746 other downstream 30948 26236685 ~ 26237398 (-) True G2217805
TU2536522 other downstream 348101 25917354 ~ 25920245 (-) False G2217605
TU2536525 other downstream 348469 25917354 ~ 25919877 (-) True G2217605
TU2532260 other downstream 3068940 23197647 ~ 23199406 (-) False G2213647
TU2532275 other downstream 3088735 23178506 ~ 23179611 (-) True G2213654
TU2537095 other upstream 547394 26888889 ~ 26890611 (-) True G2218118
TU2537466 other upstream 831758 27173253 ~ 27180388 (-) True LOC110521640
TU2538742 other upstream 1503379 27844874 ~ 27845401 (-) True G2219594
TU2538750 other upstream 1521909 27863404 ~ 27864068 (-) True G2219602
TU2538944 other upstream 2031801 28373296 ~ 28382275 (-) True lnx1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034265 True 87 lncRNA 0.49 1 NC_007131.7 14875460 ~ 14875546 (+)
striped catfish (Pangasianodon hypophthalmus) TU70790 True 7203 lncRNA 0.40 4 NC_047598.1 5322501 ~ 5329901 (-)