RNA id: XM_036969395.1


Basic Information

Item Value
RNA id XM_036969395.1
length 5543
RNA type mRNA
GC content 0.54
exon number 24
gene id LOC110521628
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26376325 ~ 26445066 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAACCGTGCCTTTAGCACGTCACTACTTCTCTGTCGCTGCCTGATGCTATTGGCCGAGTGGAGGGGAGAACCACAGCAGCGCTTGGCGAAGGCGAGTAGCACAGCAACAGAAGCCAACTAGCGCAGAAAAGAGTCGGCGAAGGGTTGACTGAATGAAAAATCAACTGGCTAGCTACATCGAGTGTAGTTTTAGGAAAGTGTCACCCTCCCCCTaaatatttattatattttataaGCAACAAACATTACAGTTTGATAGTAGTTCATATTCGTGTTTACTGTATAGCCACGAGAGGTTAGTACAATCCTAAAAGAGCGAGGATGTTGGTCCCAGCGGGAAGATAATGAAGCGGTTGCGCGTTTTGTTGGCGTGCCTCATCCTCTGGTGgtACCCCAGTCATAATGTGTGTTGTTCAGAGCACAGCTCGTCAGCTCCAGGTGTGTCTAGTGGTGAAAGCAGCCTCCCAGAGCATCATCATGAGCAGCACCACAGGACTGACCACAAGGAGGAGTCGTCgtcgaggacacacacacacacctacgacGTGGAACTGGAGACAAAGAGGGCTACACTAGAGGAGCCCAACACACCCAACACTGAACAgGTGTGTGTTTTCCAGACTGTGAATCAGAAGGAGCCTGTGGTGGTCTGGCCTGCCCCAGAACCACACCTGGATCCTGAaccccctgctgctgctgctgagcctcactcacacaacacacacatccacacagacCCAGAGCCCGATACACAACCCACTCCCCTCCAGAACCAGgctccctcatccccctccatCCCACCGCTCAGCGACGACCCAGCCCAGGGACCGGCCTCCACAGACCACACAGGCCCAGTCGAGACCCCCAGTGATGCACCGGCAGAACCCAGCCCAGCCCCCTCTACAGAAGACCCCCAACACACACCTACCTCAACCTCTTACATCCCTGCTCCAGCCCCATCCAGTTCAATAGAGGTTGCCAGATCTCATCCCGCGGTAGAGGATTCCCCTGTAGAAGTTGCCAGTGCTGAAGCCGATCCCTCTTTAGAGGTTGCCAGTGCTGGATCTAATTCCTCTCTAGAGGGCAATGTTTTCTCTGATTTCTCTGGCTCTCAGTGTGGGATGATTCCCCACAACCTGGCAACCCAAACCCCTCCTTTTGGCAGCCCGCCCACGAGtggTGATGATGACTCTGTAGAGAGCCAGTCAGAACAGGGTCACAGTCAGGACGCTCCAGGTTCTGATGCTGATGTCCAGGTGTCTCTCAGCCCAGAAGACCCAGACCAGGGCCTACCAGAGCTGGACCAGGGGGGAAACACATCCTACAGGCACCAAGACACAGAACAAGACCAGCAGGCAGTGGATGAGGTAGTGGATGCCAGTGGTAAGGAGACTGACCCCTCAGTGCCCAGTAAGGAAGACATCCCAACATTCGACGAGTGGAAGAAACAAGTCATGGAAGTAGAGAAGGAGAAGActctctccctccatacctcctccagTGGCATCCCCCCTGTGAAGAAGGTGCAgaagaacttcaaaaacaactatgCTTCTGTGGAGTGTGGCGCTAAGATGCTGTCAGCTAATACAGAGGCTAAGAGTACCTCAGCTATCCTCATGGAGAATATGGACCTGTACATGCTGAACCCCTGCAGCAACAAGATTTGgTTTGTAATAGAGCTGTGTGAGCCCATCCAGGTGAAACAGTTGGACATCGCTAACTTTGAACTCTTCTCCTCCACACCAAAAGACTTCCTGGTCTCCATCAGTGACAGgtaccCCACCAACAAGTGGGTGAAGTTGGGAACGTTCCACGCCCGTGATGAGcgcacagtccagagcttcccaTTGGACGAACAGCTCTATGCCAAATATGTCAAGATGTTCATCAAGTACATAAAGGTGGAGCTCATCTCCCACTTCGGATCAGAACACTTCTGCCCCCTCAGCCTCATCAGggTGTTTGGTACCAGTATGGTGGAGGAATACGAAGAGATCGCAGATTCCCAGTACCCCTCAGAGAGGCTGGAATACCTTGATGAGGATTATGACTACCCACCTGGCTACCTCCACTCTGAGGACAAGGGTTCTAAAAATCTGCTGGGCTCTGCCAcaaATGCCATTCTCAACATGGTCAACAACATAGCAGCCAACGTTCTGGGAGGCAAGCCTGAGGATGGAGGAGCACAGCTGGAACCCAACGCATCATCAGAAGCCCAGAACCAAACCGAGGGGAATAACGAGGTGCTGCTCACACCAacccctaccatcaccacacctcctccagcagtgGAGCCAGACCACCCCGCTCCTCAGGAGGACCCCGATGTCGCCCTCTCCTCCCCGGACTCCCCCGTACCCTCCCCGGAGGATGGACAGATCGTGACTCtggtggtggaggaagaggagcccCCACAGTCCACTGTGACTCttatggaggaagagggggatgatgatgaggagagagaggaacagtggaggagggagagcCAGCTgtactgtcctctctcctccgtgtcttccctctcttctgtctcgTGTGTTGCCACACTGCCGGAGCTGCTACGGCGCTGGTGTGACGCTTGCCTcgccagagagagacagcaagacacGTACACGCACACCCCCATAGACACTCCCTtacccacacacaccaccatacaGGACCCTGTCCCCGCCGCCACACACACCCAGGAAGCCCCAACACACACAGAGCCGGTCCCTGATCCTGAGATGGCCCCCCGGGCCCAAAACAAGGTTTTATCTCCTACAGattcacacaatcacacagacacacaccccgtAGACCACATCATTGTTCTGGAGCCTAGCCGGACCTCTACCCTGCCCCCCCACAGCTTCTCTCACACCCCCCTCTCCAAACCCACCCCTACCCAGGACGAAGCTCCCCGGCCCCTCAGCCAAGATGACCCCGTCCCCCCTCCAGCCCTGCAGGGGGTCCCTGTCCCAGAGGCCCAGGAGGCCAGCACCCCCAACCCTTCCCCCAGTCCCACtacccccctccaccctccaaCTTCTGAGACAGCTTATCTGgacctccctccactctccctgaaGGAGCAGCCAGTCCAGCCTCTCCCCACTGCCTCCAGACCTGCAGACATCCCCCCTCCCACCGAACTCCCTGTGCCCCTCCAGCCCGACACACACGCAGAGCCACACACACCCAGGGCTGGGGTAGAAAGTGGAGACCTCAAGGGCCAAGGGGAGCAGGGTGGCGACTCCTCTCCCCAGCCAGCAGAGCACCCACTTAGGGAAGAGTCCACGGAGGACCTGCTACTTAGCGTCCCGGTTATTGCTAACGGACATTTACACCGGACAGCTACGGACTTCTACGCTGAGCTGCAGAGCACAGGGGAGTACATTGGAGGGAATGGAGGCATGAACGGAGGACTGAACGTGCACGGGTCCAGTCAGAAGGAGAGTGTGTTCATGAGGTTGAACAACAGGATCAAAGCATTGGAGATGAACATGTCCCTCAGCAGCAGATATCTGGAGGAACTCAGCCAGAGGTATCGTAAGCAGATGGAGGAGATGCAGAGGGCCTTCAACAAGACCATCATCAAGCTACAGAACACCTCCCGCATCGCTGGAGAACAGGACCAGAAACAGACCGAGTCAATTCAGATGTTACAGGGCCAGCTGGAGAACGTCACCAAGCTGATGATCAACCTCACCATGACTGTCTCACAGTTACAGAAAGAGGTGTCAGACCGACAGAGTTACCTGGTGGTGTCTCTagtcctgtgtctctgtctgggccTGGTGTTCTGCCTGCACTGCTGCCGGAGCACCAACACACAAACCACCACACACACCGCAGTCAACCACTACCCCAGCCCcaagagGTGTTTCTCCTCCTATGAGGATATGAGTCTGAAGCGGAGGATATCGTGTCCTCTCGTACGCTCCAAGTCCTTCACCTTTCCTACTTCAGAAGTAGGCCCCGACGACCTATACATTGTTGAACCTTTAAGGTTCTCACCAGAGAAAAAGaagaaACGATGTAAACTGAAGGCAGCATTATCAGCTCCCTCTTCCCCAGGGGCTGACGGGGCACTCGAATGCAACGGCCTCCCCCACTCTGTGactcccccacccccaccaccacctccaatTTTAGAAGACATCTCCTGTAAGGAGCTCCACGTCCCCTCAGAGAGCAGCAGCGGCAGCTCTTCCACCCACTCTGAGGAGTCCTACATCAGCCGTGGCCCGCCACTCTCCTCCCCCCCGTGCATGTTTAACGGCCATGCTGCCCTCCCTGTCCCGCTctgcctcccctccctccttccctctaagaAGAGGTCAGCGAAGCGTCAGAGGTCTCGTCAAGTGGAGCTGCAGTtatcctccagacagacagggggggcTATGAACTCTCTGCCCAGCCTGCAGCAGCTGATCAAGGGAAACAAGAAGATCAGCGTGGGGACTATTGGCCCTACGACCGTCACAGGACATGTCTAATCACAAACGCACACTTCAGActgactcagacacacacacgcaccctggTAGCAgacttggttagggaggtgtgaAGGGGTGTGGTCTCGCCCCAAAATGGCCACATCTCTGAACCACTTCTCCCATGAGCACCCTGGCCTACAGTGGAACTCGGAAACCATGGCATTAGTTGCCCATCAACAGCCACCCtccccaccaatcagagaccattTAATGGTCATGTGCCTTTACTGTCCATTCGAAAGCTTTCACCaatggaaaaaaataataaattcaAAGTATTGTTCTTTTTCTTTTCGGAGAGCAAAACTGTAATGCTTTGGAGTGTTATAAGAAAACAGACATTCAAACATGTGACCTGTTTCTACTGGACAAGCCCATTGCTCCATAAGACCTAGGCGTCAGGGGCTTGTACTGCAGCCCTGTACCCAGAGAGGAGAAGGGCTGGCTGGGTAGAGCTCCTACCGGAGCCCCCTGCCTCTCCTGGGGCCTGTGAAAGTAGAGTATGAAGCTGTAAGGATGAAATGTGTCGCAATGAGAGAACTGTGCAGTAGGACTAGTTACTTCTctaacccatccctccctcctttctcctgtcCTCCATTTCCACATTCTGTTCATTCTCTGTGTAGTGTTCAGAGCTAGCGAACACTATTGCAGTTGTTGTTCATATGGGACTGGGGTGTTAACCCTTCACACCACAGCAGGCCCTCTGTCTCGCCCTCTCAGGCAGTCTAACCTAACACAACCAGCAGAGCTGAATGAAGAtacactgcgtgtgtgtgtgtgtgtgtgttcatgtctctgtgtctctagcGGCTAGCCATGTTTATCCAGCTGTGATACTAAGGAAGAAGCTCTAACTATTGAACTAGTTTACATAGCAGCTTGTCTCTCCAGTAAGACCTCTGAAAGTTGTATGGGCTGGGCCCAAAAtatacacacacgcgcgcgcgcacacactaacaaacacacagccAGCTAAGAGAAAAGGGATATTGTACTGTTAAAATACGGAAAATTAGGATGAAGTATATTCAATTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2536726 lncRNA downstream 92558 26221425 ~ 26283767 (-) False G2217789
TU2536728 lncRNA downstream 92603 26221425 ~ 26283722 (-) True G2217789
TU2536736 lncRNA downstream 124247 26250113 ~ 26252078 (-) True G2217795
TU2536695 lncRNA downstream 141860 26180372 ~ 26234465 (-) True G2217763
TU2536741 lncRNA downstream 145660 26230324 ~ 26230665 (-) True G2217800
TU2536954 lncRNA upstream 122779 26567844 ~ 26618056 (-) True G2217991
TU2536970 lncRNA upstream 162458 26607523 ~ 26607926 (-) True G2218006
TU2537035 lncRNA upstream 275182 26720247 ~ 26795798 (-) False G2218063
TU2537034 lncRNA upstream 276989 26722054 ~ 26795798 (-) False G2218063
TU2537044 lncRNA upstream 282544 26727609 ~ 26743028 (-) True G2218069
XM_021599310.2 mRNA downstream 6275 26366888 ~ 26370050 (-) True pigc
NM_001160547.2 mRNA downstream 64278 26307586 ~ 26312047 (-) True itpa
NM_001165132.2 mRNA downstream 243388 26127536 ~ 26132937 (-) True LOC100305228
XM_021599298.2 mRNA downstream 402412 25971768 ~ 25973913 (-) True LOC110521616
XM_021599297.2 mRNA downstream 402420 25971768 ~ 25973905 (-) False LOC110521616
LOC118945904 mRNA upstream 75740 26520805 ~ 26520855 (-) True LOC118945904
XM_036968698.1 mRNA upstream 378199 26823264 ~ 26841732 (-) False prkaa2
XM_036968699.1 mRNA upstream 378199 26823264 ~ 26841733 (-) False prkaa2
XM_021599322.2 mRNA upstream 565164 27010229 ~ 27023274 (-) True bloc1s2
XM_021599323.2 mRNA upstream 631732 27076797 ~ 27078221 (-) True bsnd
TU2536765 other downstream 34830 26268346 ~ 26341495 (-) True G2217824
TU2536746 other downstream 138927 26236685 ~ 26237398 (-) True G2217805
TU2536522 other downstream 456080 25917354 ~ 25920245 (-) False G2217605
TU2536525 other downstream 456448 25917354 ~ 25919877 (-) True G2217605
TU2532260 other downstream 3176919 23197647 ~ 23199406 (-) False G2213647
TU2537095 other upstream 443824 26888889 ~ 26890611 (-) True G2218118
TU2537466 other upstream 728188 27173253 ~ 27180388 (-) True LOC110521640
TU2538742 other upstream 1399809 27844874 ~ 27845401 (-) True G2219594
TU2538750 other upstream 1418339 27863404 ~ 27864068 (-) True G2219602
TU2538944 other upstream 1928231 28373296 ~ 28382275 (-) True lnx1

Expression Profile