RNA id: TU2536736


Basic Information

Item Value
RNA id TU2536736
length 1572
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G2217795
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26250113 ~ 26252078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATATTATTTTATTAGTTTCTTTAACCAAACCAAGAATGTAAATAAGACCGTACATATTTTAATACAGCGATGTACCCCCTgtacaagtaaaactaaactaATTATCATCATGATCACACCCTCCACCACTCCCTCCTACACAATTCTCATTCCATGTTCTGGTTAGAGTGGGGTGGGGCAACTGGCTCCATAGCCCCCTACCCACTAGGGGAGCATACTACTGTACATTTCTGAAGGACCCTTCTCACCATGGTAAACCCGAGATGAGTGAGCGGTGTAGGCTTGAGTGAGACTGAGTGAGttggagagacaggagaagacAGGGGCGAGCTCTCCTCTCAACACTAACACCTGTCCTTCCGCCCGGAACACAGCTGAACCATAGACTACAGTTCAACTCTGGAGGCTTTTTTCTCATGCtgttctcttcctccccctctcggtCAGTCTTGTTTCCTCTTGGTGAGGGTTACACTGAATGATTTTCTGTTTCTACAGTTTTTAAAATTAAACCCCCACTCTCTAGCCCTCTCCTGCTGTGTGTTCTGGCTAAGGGCACCAgtactcactctctctttctgtcagtaGCAGCAGGGTAGGGTGCCCGACAGTaaagtgtgtgtatgagagacaCTGAGGATGGGTGTGTGAACGGTGGTAGAGGAGTGTATTATAGGTGTATTCTACTCTCCTTACTcttgagggaggcagggagggaaatGGAAGAGGGGAGTGTGTGTGGTGATCATGCAGAGATTGTACACACTCACATAGCTCTGTGTTAGTAATGATGGGAGGAGGACAGACAGGGGAATAGAACGTGTCTGTGCTTCACTAAAAGACATCGCTTTAAATAAGATTGTTCAACTACAAAAACAAAAGATTGATACATTCTTTTGTTAACAAAAAGGAGAGCCCTGTCTTCATGTGATTCAACTGAGAAAAGGAAAGGAACTGAAATCATAGAGCTATAAAAAAATGGCAAAATCAGCAGCGAATCTCATATCTTTTCTTTTTTCGCTCCCTCTTTTTCTACCATCGCGGTAGACATTTGAAGTACAGCTTACGGTGCTGTCTTCCGCCGAAAACACACAGACCCCCAAtagtggaggacaggagagaaggagaggggaagagaaaggtgGGAGGTTGGAGCACACACAGTAGCCCTCTCATTCAGACTTATAcaccccacctctcctccctttctctccctccccctctccatgtgatgtgtgatgtgagaGCGAGTGATTGTGTGAATGAGTGGAGCAGCTGGATtatttctccacctctccttctgtgGAGAATGTTGAGGCTCTACTTCCCCTCCTCTGGTTTGATGGCCTGGGGCTTGATAGGGCCGGTCCGGATGGGCTTGCCCACCGACAGAGAGGATTTGTCGGGCTCAGGGCGCTCCACGACTCCTACGGTCTGGTGGTTGGGGGGCAGGATGTCGAGGGGGGGTTTGCATCCCCCCTGGTCGAGACGAGAGGGTTTGGAGACTGACGGAGCCTTGAGCTGCTGCTCTGAGAAGAACTTATGAGTCGACTGGAGCACCTCGGCTCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2536695 lncRNA downstream 15648 26180372 ~ 26234465 (-) True G2217763
TU2536741 lncRNA downstream 19448 26230324 ~ 26230665 (-) True G2217800
TU2536648 lncRNA downstream 97602 26148105 ~ 26152511 (-) True G2217720
TU2536622 lncRNA downstream 191662 26058063 ~ 26058451 (-) True G2217694
TU2535905 lncRNA downstream 340039 25909761 ~ 25910074 (-) True G2217037
TU2536783 lncRNA upstream 121680 26373758 ~ 26380496 (-) True G2217838
TU2536954 lncRNA upstream 315766 26567844 ~ 26618056 (-) True G2217991
TU2536970 lncRNA upstream 355445 26607523 ~ 26607926 (-) True G2218006
TU2537035 lncRNA upstream 468169 26720247 ~ 26795798 (-) False G2218063
TU2537034 lncRNA upstream 469976 26722054 ~ 26795798 (-) False G2218063
NM_001165132.2 mRNA downstream 117176 26127536 ~ 26132937 (-) True LOC100305228
XM_021599298.2 mRNA downstream 276200 25971768 ~ 25973913 (-) True LOC110521616
XM_021599297.2 mRNA downstream 276208 25971768 ~ 25973905 (-) False LOC110521616
XM_036969397.1 mRNA downstream 307749 25938771 ~ 25942364 (-) True LOC110521615
XM_021599295.2 mRNA downstream 307867 25938771 ~ 25942246 (-) False LOC110521615
NM_001160547.2 mRNA upstream 55508 26307586 ~ 26312047 (-) True itpa
XM_021599310.2 mRNA upstream 114810 26366888 ~ 26370050 (-) True pigc
XM_036969396.1 mRNA upstream 124247 26376325 ~ 26445062 (-) False LOC110521628
XM_036969393.1 mRNA upstream 124247 26376325 ~ 26445063 (-) False LOC110521628
XM_036969391.1 mRNA upstream 124247 26376325 ~ 26445065 (-) False LOC110521628
TU2536746 other downstream 12715 26236685 ~ 26237398 (-) True G2217805
TU2536522 other downstream 329868 25917354 ~ 25920245 (-) False G2217605
TU2536525 other downstream 330236 25917354 ~ 25919877 (-) True G2217605
TU2532260 other downstream 3050707 23197647 ~ 23199406 (-) False G2213647
TU2532275 other downstream 3070502 23178506 ~ 23179611 (-) True G2213654
TU2536765 other upstream 16268 26268346 ~ 26341495 (-) True G2217824
TU2537095 other upstream 636811 26888889 ~ 26890611 (-) True G2218118
TU2537466 other upstream 921175 27173253 ~ 27180388 (-) True LOC110521640
TU2538742 other upstream 1592796 27844874 ~ 27845401 (-) True G2219594
TU2538750 other upstream 1611326 27863404 ~ 27864068 (-) True G2219602

Expression Profile