RNA id: TCONS_00059044


Basic Information

Item Value
RNA id TCONS_00059044
length 1767
RNA type mRNA
GC content 0.49
exon number 18
gene id XLOC_030196
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31995683 ~ 32046297 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAATTAGTATTTGGCTGTTTTGGAttgacttttttttgtgttttgttttcagcagCTGCCATGACAGGGGTGGGGGCAGAGGATGACATCCCTCTCTGTGAGAGGAAAACTGTCACTGACTTCTGCTATCTCCTGGACAAGTCCAAGCAGCTTTTCAATGGCTTAAGGGATCTGCCTCAATATGGACACAAGCAGTGGCAGTCCTATTTTGGCCGAACGTTTGACGTCTACACCAAGCTGTGGAAGTTTCAGCAGCAGCACAGACAAGTCCTGGACAACCGGTATGGTCTCAAGAGGTGGCAGATAGGTGAAGTGGCCTCAAAAATTGGCCAGTTGTACTACCATTACTACCTCCGCACTTCAGAAACAAGCTACCTAAATGAAGCCTTCTCTTTCTATTCGGCAATTCGCCAACGGTCATATTACCACCAGGTCAACAAAGAAGACAGGCCAGAGCTGGTTGTAAAAAAGCTGAGGTATTACGCTCGGTTTATCGTTGTTTGTCTGTTGCTCAACAAGATGGACCTGGTTAAGGTGTTGGTTAAGGAACTTTCGGAGGAGATTGAGGACTACACCCAGCGCTTCAACACTGAGGACCAGTTAGAGTGGAATCTGGTGCTGCAGGAAGTAGCAGCTTTTGTGGAGGCCGATCCTCTGATGATCCTGAATGATGACAATGCTGTGGTGGTCCTTTCCAATCGGCTGCAGGAGGGAGGTGTGCCCCCTCTGGAGCAGGGCATGGTGGTTGGCCAGCTCACCTTGGCAGATGCTCTCATCtcatttttttgttgttgcaatgATTGGGTGAAGTTCAGCGAGCTGACCATCGATATGTTTCGAATGCTTCAAGCGCTTGAGAGGGAACCGGTGAACCTGGCTACGCAAAGCTCCAAACCAGGGACACTTGAGCCCAATGAAAAGCCGGCCAAGAGAGAGAACCCTCATAAATATCTCCTCTACAAACCAACCTTCAGCCAGCTCTACACTTTCCTGTCTGCCTCCTTCAAGGAGCTGCCGGCCAATAGTGTCCTGCTGGTGTATCTCTCTGCCACTGGAGTTTTCCCCACTGGACGCTCTGAGAGTGAAGGACCTTATGACTTTGGAGGTGTCCTGACCAATACTAACCGAGATGTGGTGAATGGTGAGACGGTGCAGAAAAGAAACCAGGCACAAAAAGAGATGCACTGCCTCCACCCAGGAGACCTTTTCCCCTTCACTAGGAAACCTCTGTTTATCATTGTCGACTCCTCCAACAGCACAGCTTATAAGAATTTCTCCAATCTGTTCGGCCAGCCCCTTGTTTGCCTGCTTTCTCCAACAGTATATCCGAAGAGCATGCAAGACCAGTCTCAGCGTGGGAGTCTGTTTACTCTCTTCCTTTACAACCCCCTCATGGGCTTCCTATCTGTCTGTGGACTGAGCAGCATGCGTTATGGATTGTGGGAAAAAGCCCAGGAACTCCTGCGGAAGGTTTTCCATGACATTGGCCAGATGATCACAAGTTCACGAGTTATAGATCAGGCGTATCTGCAGTTTTATGGTGATGAGTTTCTGCGTCTGCTTATGATCCGCTTCGTGTTCTGCTCCTCCGCGCTCCGGTTACACAAGCTCTTCCGGGAAGCGAGGAGTTTTCCAGAATCGTATCCCCCTCTGCCAAAACAGGAGATGGTGGAGAGCAGCCTTCTACAGAAACATGTGCTGGAGCTGGCGGCTATGCTGGACGTGCAAAACCTCTTTTCCGATGGCATGCTGGATAACTATTGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-57 Predicted to enable transcription corepressor activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human SCAI (suppressor of cancer cell invasion).

Ensembl:

ensembl_id ENSDART00000179879

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059039 lncRNA upstream 14988 31983191 ~ 31994554 (+) True XLOC_030195
TCONS_00061730 lncRNA upstream 91406 31911003 ~ 31918136 (+) True XLOC_030192
TCONS_00061729 lncRNA upstream 97464 31904847 ~ 31912078 (+) True XLOC_030191
TCONS_00059031 lncRNA upstream 141173 31867518 ~ 31868369 (+) True XLOC_030190
TCONS_00059025 lncRNA upstream 192706 31813336 ~ 31816836 (+) True XLOC_030188
TCONS_00061731 lncRNA downstream 37432 32083729 ~ 32086577 (+) True XLOC_030198
TCONS_00061732 lncRNA downstream 213866 32260163 ~ 32263220 (+) False XLOC_030204
TCONS_00059058 lncRNA downstream 213866 32260163 ~ 32264060 (+) True XLOC_030204
TCONS_00061733 lncRNA downstream 312583 32358880 ~ 32367481 (+) True XLOC_030206
TCONS_00059073 lncRNA downstream 804542 32850839 ~ 32856096 (+) False XLOC_030210
TCONS_00059038 mRNA upstream 14141 31983098 ~ 31995401 (+) False XLOC_030195
TCONS_00059037 mRNA upstream 28347 31965845 ~ 31981195 (+) True XLOC_030194
TCONS_00059036 mRNA upstream 29024 31959954 ~ 31980518 (+) False XLOC_030194
TCONS_00059034 mRNA upstream 56754 31946973 ~ 31952788 (+) False XLOC_030193
TCONS_00059046 mRNA downstream 29812 32076109 ~ 32080192 (+) False XLOC_030197
TCONS_00059047 mRNA downstream 29839 32076136 ~ 32080192 (+) True XLOC_030197
TCONS_00059048 mRNA downstream 95493 32141790 ~ 32148529 (+) True XLOC_030199
TCONS_00059049 mRNA downstream 116387 32162684 ~ 32182682 (+) False XLOC_030200
TCONS_00059051 mRNA downstream 160081 32206378 ~ 32217579 (+) False XLOC_030201
TCONS_00059033 other upstream 64820 31944607 ~ 31944722 (+) False XLOC_030193
TCONS_00059030 other upstream 140914 31860071 ~ 31868628 (+) False XLOC_030190
TCONS_00059020 other upstream 460755 31548312 ~ 31548787 (+) True XLOC_030185
TCONS_00059006 other upstream 1182650 30780600 ~ 30826892 (+) True XLOC_030177
TCONS_00059004 other upstream 1260501 30743846 ~ 30749041 (+) True XLOC_030175
TCONS_00059050 other downstream 132333 32178630 ~ 32182728 (+) True XLOC_030200
TCONS_00059060 other downstream 298892 32345189 ~ 32346131 (+) True XLOC_030205
TCONS_00059063 other downstream 591351 32637648 ~ 32637765 (+) True XLOC_030208
TCONS_00059074 other downstream 812131 32858428 ~ 32859254 (+) True XLOC_030210
TCONS_00059077 other downstream 836410 32882707 ~ 32886909 (+) False XLOC_030211

Expression Profile

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