RNA id: TCONS_00005550


Basic Information

Item Value
RNA id TCONS_00005550
length 1297
RNA type mRNA
GC content 0.54
exon number 3
gene id XLOC_003030
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40951697 ~ 40968095 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACACAATGACCCTCAACCACTCTGCTGCCAACCTGAGCTGGCAAAACTGCACACTGTTGCCGTATTACATCCACTCGGCGGGGATGGCGGTCAGCTACATCCTCTCGTATCTGCTGGTGTTGCTGCTGTGTGTGGTGGGCAACGGGCTGGTCTGTCTGGTGGTCATCAGGAACAGAAACATGCGCTCCGTCACTAATCTCTTCATCCTCAACCTGGCCGTCAGCGACCTGCTGGTGGGCATTTTCTGCGTGCCCACCACACTGATTGACAGCCTCATCTCAGGTTGGCCTTTTAGCCAGATCACCTGCACTATGAGTAACCTGGTTCAGGGCATGTCCGTGTCTGCTTCTGTCTTCACCCTGGTTGCCATAGCAGTAGACAGATTTACAGGGATCGTCTACCCTTTCCACCACCGCCTGCGTCCGGTCACGGCCCTCTTTGCCATCGTTTTCATCTGGCTGCTCGCCTTCGCCATCATCTTTCCTTCCGCCGCCACTCTCACCGTCATCCACCTGGACGACATGTACATGGTGCAAAACGACCAGATCTACCCCCTGTTCGTGTGCTTCGAGGACTGGCCCAGGGCTGACATGCGGCGCGTCTACACCACCGTCATCTTCGTCCACGTTTACCTGGCGCCGCTCGGCCTCATCAGCATCATGTACGGCTGCATCGCAGCCAAACTCTCCAGCAACCTCCAGGAGAACCGTTTACGCTCCAGACGGAGGATGAAGGTGATAAAGATGCTAATAATGGTGGCAGTGCTCTTCATGGTGTCCTGGCTGCCGCTCTGGACACTGATGCTCCTCACGGATTATCAGGATCTGGACCGCCAGCAGATCGATTTTCTGAGCAGCTATCTGTTCCCTGTGGCGCACTGGCTGGCGTTCTTCAACAGCGGCGTCAATCCCATCATCTACGGCTTTTTCAATGAGAATTTTCGCAGGGGTTTTCAGGCCGCCGTGGCTTGTGGGTTCTGCAGTTCTGTGGCATCAGAGATGCGACACACGCATTTCGTTCTGCCACCCCCTAACAAAGTGTCCGACGGGAGTCGCGGGGTGACCAGCGGGAGGAAAGAGCGATGTTTTCCGGTGATACCTCACGGGGCGGCTCATGGGATTCAAGGGATTCTTTTGGAGGATATGAACGGGACGGTTGCTTCACACAGGGTGCTCGGAGCATGGATGGAGTGAATGGTGCAGtttagggctgaacaatacatCGGttgagcattgatattgcaatgtgtggtACATATTTATTATAGTACACATGGAATCAAAACTAAACATC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008188 neuropeptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0042277 peptide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-18 Predicted to enable G protein-coupled receptor activity and peptide binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within neuropeptide signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human NPFFR1 (neuropeptide FF receptor 1).

Ensembl:

ensembl_id ENSDART00000076359

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006123 lncRNA downstream 96399 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005779 lncRNA downstream 331541 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 454287 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 462859 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006122 lncRNA downstream 1863408 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005562 lncRNA upstream 403369 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006124 lncRNA upstream 1018170 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 1018170 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA upstream 1018170 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA upstream 1018170 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005545 mRNA downstream 13790 40848354 ~ 40939706 (-) False XLOC_003027
TCONS_00005546 mRNA downstream 13790 40858104 ~ 40939706 (-) False XLOC_003027
TCONS_00005548 mRNA downstream 14193 40913303 ~ 40939303 (-) True XLOC_003027
TCONS_00005544 mRNA downstream 126839 40821804 ~ 40826657 (-) True XLOC_003026
TCONS_00005542 mRNA downstream 134360 40787005 ~ 40819136 (-) False XLOC_003025
TCONS_00005551 mRNA upstream 96000 41060739 ~ 41156348 (-) False XLOC_003031
TCONS_00005552 mRNA upstream 165785 41130524 ~ 41157135 (-) True XLOC_003031
TCONS_00005555 mRNA upstream 314268 41279007 ~ 41302909 (-) False XLOC_003032
TCONS_00005554 mRNA upstream 314268 41279007 ~ 41302909 (-) False XLOC_003032
TCONS_00005553 mRNA upstream 314268 41279007 ~ 41302909 (-) False XLOC_003032
TCONS_00005547 other downstream 50259 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 212049 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 415449 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 432396 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 435898 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005570 other upstream 1005152 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 1146833 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 1947194 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 2028107 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 2571221 43535960 ~ 43536095 (-) True XLOC_003064

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_00234248_00237084.mRNA True 1659 mRNA 0.51 3 CI01000158 233777 ~ 237084 (-)