RNA id: TCONS_00005564


Basic Information

Item Value
RNA id TCONS_00005564
length 1378
RNA type mRNA
GC content 0.44
exon number 8
gene id XLOC_003035
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41409255 ~ 41450454 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGAGggaaaacgagagagagagagaagggagggagaaaagagagagagagcaaACTGAGACTCATGTCTGCTTCTGCTGATCCCTGCACCCGTCCCTGCTGTCAGCCAGACGTCCTGCAACGCCACCCCTGGATCATCTACACCCTTCCCCTGAAATCCTAATAGATAAAGCCTGCACACATCATCTCAGCGTTCGTTTAATCCATGCATGGAGACATGTGGATGCTCACACACGCGCGCATATGGCCGCATTGACTCTCATGTGCACGCTATTAGTGACTTTACTATGGGAAACTGTGTTAAATCGCCGCTTAAGAATCTCTCCAAGAAGAACAGAGAGCTGAGACCAGAGGAAATGGATGAGCTCCGAGAAGCCTTTAAAGAGTTCGATAAAGACAAAGACGGATTTATCGGCTGTAAAGACCTAGGGAACTGCATGAGGACAATGGGTTACATGCCTACTGAGATGGAGCTCATCGAACTCAGCCAGCAGATCAACATGAACCTGGGAGGTCATGTGGATTTTGAGGACTTTGTGGAGTTGATGGGACCCAAACTTCTGGCCGAGACGGCAGATATGATTGGAGTGAAGGAGCTGAGAGACGCGTTCAAAGAGTTCGACACAAACGGAGACGGTCAGATCAGCACAGCCGAGTTACGAGAGGCCATGAAGAAACTGCTGGGCCAGCAGGTGGGTCACCGGGATCTGGAGGACATTCTGCGCGACATCGATCTGAACGGAGACGGACATGTCGATTTCGAAGAATTTGTGCGAATGATGTCTCGCTAGAGATAAAGTGGTGAAAGCGTGTCAGAAAGAGGATCTCCTGCTGCGCCAGAGacagaggagaagaagaagaggaggaaagatCAGCAGAAAACCTCACAAGAGGAGCTCTGGGTCACAACCTCTGACCTCACAGCACACCTGAGAGAAACTGCACTGAAACCCTGCATCACAGCGTTTCTGAAGACCACATGCCAATACTGTGATTTACATTTGCTTTACGGGGTTTATTTTCATCCCATTGAAAGCCTTCGAGAGGTCTAATgcaaaaaacataaatcacaaacatGAAATCCAATATTAACGAAAATACTCAGTATTAAAACATCAGATATATTTCATTTACTGGCATCCGGAAACTGCTGTATGATATCAGGGTGCAACGATTGCAATAACATTTGCTGTTTCATATTTAAGCTATTTATTATTATCTGTAAAGtatatagagagaaagagagatgagtGTGTATAGTTTTccctttacactgtaaaaaaaattatattaaatttaaaaagttgaaCCAATTTACCTTTACCAGTCATTTTAACTTGCATCACTTAAAACATCAAGTTaaaatctgattaactt

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-111 Predicted to enable calcium ion binding activity. Is expressed in brain; heart; notochord; otic vesicle; and retinal inner nuclear layer. Orthologous to human CABP1 (calcium binding protein 1).

Ensembl:

ensembl_id ENSDART00000189549

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005562 lncRNA downstream 40627 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00006123 lncRNA downstream 552167 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005779 lncRNA downstream 787309 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00005521 lncRNA downstream 910055 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005520 lncRNA downstream 918627 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00006124 lncRNA upstream 532455 41982909 ~ 41986276 (-) False XLOC_003040
TCONS_00006126 lncRNA upstream 532455 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00006125 lncRNA upstream 532455 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005781 lncRNA upstream 532455 41982909 ~ 41986363 (-) False XLOC_003040
TCONS_00005780 lncRNA upstream 532455 41982909 ~ 41986595 (-) False XLOC_003040
TCONS_00005561 mRNA downstream 9215 41362390 ~ 41400049 (-) False XLOC_003034
TCONS_00005560 mRNA downstream 11601 41362390 ~ 41397663 (-) False XLOC_003034
TCONS_00005559 mRNA downstream 56656 41352153 ~ 41352608 (-) True XLOC_003033
TCONS_00005558 mRNA downstream 56762 41318583 ~ 41352502 (-) False XLOC_003033
TCONS_00005557 mRNA downstream 106423 41279665 ~ 41302841 (-) True XLOC_003032
TCONS_00005565 mRNA upstream 174257 41624711 ~ 41664427 (-) True XLOC_003036
TCONS_00005566 mRNA upstream 375877 41826331 ~ 41907213 (-) False XLOC_003037
TCONS_00005567 mRNA upstream 379144 41829598 ~ 41906609 (-) True XLOC_003037
TCONS_00005568 mRNA upstream 476434 41926888 ~ 41940302 (-) True XLOC_003038
TCONS_00005569 mRNA upstream 518974 41969428 ~ 41980797 (-) False XLOC_003039
TCONS_00005547 other downstream 506027 40903121 ~ 40903237 (-) True XLOC_003029
TCONS_00005540 other downstream 667817 40741330 ~ 40741447 (-) True XLOC_003024
TCONS_00005531 other downstream 871217 40537440 ~ 40538047 (-) True XLOC_003015
TCONS_00005526 other downstream 888164 40520823 ~ 40521100 (-) True XLOC_003010
TCONS_00005525 other downstream 891666 40516749 ~ 40517598 (-) True XLOC_003009
TCONS_00005570 other upstream 519437 41969891 ~ 41979664 (-) True XLOC_003039
TCONS_00005579 other upstream 661118 42111572 ~ 42131408 (-) True XLOC_003044
TCONS_00005596 other upstream 1461479 42911933 ~ 42912047 (-) True XLOC_003057
TCONS_00005598 other upstream 1542392 42992846 ~ 43028806 (-) True XLOC_003058
TCONS_00005609 other upstream 2085506 43535960 ~ 43536095 (-) True XLOC_003064

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_00430123_00437063.mRNA True 872 mRNA 0.49 7 CI01000158 430031 ~ 437063 (-)