RNA id: TCONS_00060110


Basic Information

Item Value
RNA id TCONS_00060110
length 318
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_030918
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 15523008 ~ 15524782 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atggtagagtggccagatggaagccactcctCGCCTGGAATTTTtcaaaaggcatctaaaggactctcagaccataagagaCTAAATTCTCTGgttgatgagactaaaattgaactctttggagtgaatgccgggtgttacgtttggagaaaaccagGCACttccatccctacagtgaagcatgggggtggcagcattatgctgtggggagcttttttagcagcaggaactggaagaccagtcaggatagagggaaagttgaatgcagcaatGTCATGTACTGGACAAGTCAATAAATATACAGGACGTCCAGGCTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000189781

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061963 lncRNA downstream 212900 15307539 ~ 15310108 (-) True XLOC_030915
TCONS_00060100 lncRNA downstream 307224 15186823 ~ 15215784 (-) True XLOC_030913
TCONS_00060097 lncRNA downstream 346910 15066333 ~ 15176098 (-) False XLOC_030911
TCONS_00061964 lncRNA upstream 288993 15813775 ~ 15817557 (-) True XLOC_030921
TCONS_00060117 lncRNA upstream 421436 15946218 ~ 15948868 (-) True XLOC_030923
TCONS_00060121 lncRNA upstream 673762 16198544 ~ 16218777 (-) True XLOC_030925
TCONS_00061965 lncRNA upstream 754458 16279240 ~ 16315741 (-) False XLOC_030926
TCONS_00061966 lncRNA upstream 828215 16352997 ~ 16356940 (-) True XLOC_030927
TCONS_00060108 mRNA downstream 28711 15359995 ~ 15494297 (-) False XLOC_030917
TCONS_00060107 mRNA downstream 28711 15359995 ~ 15494297 (-) False XLOC_030917
TCONS_00060109 mRNA downstream 28844 15360199 ~ 15494164 (-) True XLOC_030917
TCONS_00060105 mRNA downstream 172756 15311591 ~ 15350252 (-) False XLOC_030916
TCONS_00060106 mRNA downstream 172756 15331365 ~ 15350252 (-) True XLOC_030916
TCONS_00060111 mRNA upstream 165857 15690639 ~ 15692030 (-) True XLOC_030919
TCONS_00060113 mRNA upstream 316741 15841523 ~ 15851953 (-) True XLOC_030922
TCONS_00060115 mRNA upstream 419629 15944411 ~ 15948920 (-) False XLOC_030923
TCONS_00060116 mRNA upstream 419630 15944412 ~ 15948833 (-) False XLOC_030923
TCONS_00060118 mRNA upstream 603432 16128214 ~ 16139600 (-) True XLOC_030924
TCONS_00060102 other downstream 299551 15222015 ~ 15223457 (-) False XLOC_030914
TCONS_00060087 other downstream 1150072 14368100 ~ 14372936 (-) True XLOC_030906
TCONS_00060083 other downstream 1277728 14245149 ~ 14245280 (-) True XLOC_030905
TCONS_00060070 other downstream 1990020 13532874 ~ 13532988 (-) True XLOC_030896
TCONS_00060061 other downstream 2402415 13110935 ~ 13120593 (-) False XLOC_030890
TCONS_00060112 other upstream 209743 15734525 ~ 15734580 (-) True XLOC_030920
TCONS_00060114 other upstream 419629 15944411 ~ 15948833 (-) False XLOC_030923
TCONS_00060129 other upstream 920567 16445349 ~ 16445465 (-) True XLOC_030930
TCONS_00060137 other upstream 1337833 16862615 ~ 16890246 (-) False XLOC_030932
TCONS_00060139 other upstream 1374141 16898923 ~ 16899047 (-) True XLOC_030933

Expression Profile

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