RNA id: TCONS_00060116


Basic Information

Item Value
RNA id TCONS_00060116
length 2135
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_030923
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 15944411 ~ 15948920 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATTAAGGCGATTTTTTTCGGAAATTTCCCACCCCTAATCAAAACAGAAGGGGTCTCAACACAGATCCTAATCCAGACAACCACACAAAAATGGTCGTAGTTACAGCAGGGACCGGAGGAGCCCACAAAGTCCTCCTGATATCGGGAAAACAGAGCGCTTCGACCGGCGCGACACAGGGCGGGTACAGCCGCTCAATATCTGTCATGATACCGAATCAAGCCTCTTCAGATTCAGACTCCACCACCTCTGGACCACCACTGAGAAAACGACAGAGACTCACACATCTGAGCCCAGAGGAAAAAGCACTTCGAAGGTGAGGCGAGCTCGGATTTATTTTGACAAATGTGttaAGTCTTCTAGCGTGCTTCGTTCAAAACGAGATATCTTTATCAGTGCGCGAATGTTTAACGTTACTTTTATATATAGACTGTCGAATTTGTACGTTTCAGGAATGCTAACGCTTTAAACGAACCAGTTTGACCCTTCCATATGGAAGACTTTGAATCCCTGCCAAGATCAGTGGGTTTTGCCGGTCAGTCCCTCCCCCTCTGAATCAATATACTCACATCTGCCTGCGTGGCAGGAGCGAGACCGCGCATGCGCCATTTCCTCAACACTCTTTCAGCCCTGCCAAAATGGATTGCATAATAATAAACCTGGTTCAAATAACAATGtagaaaatgaataaactgaaatTGTATAGTCACTGTATCATGTCCcagataaaaatgtatttattttctagctataaatgtaaaaaataaataataatcataataatcatgtttttttttgttttgttttttaggaaatTAAAGAACAGAGTTGCTGCACAGACAGCAAGAGACAGAAAAAAGGCAAAAATGGGGGAGTTGGAACAGCAAGTGCTGGAGTTGGAGCTGGAGAATCAGAAACTTCACGTTGAGAACAGGCTGTTGCGAGACAAGACGAGTGATCTGCTCAGTGAGAATGAGGAGCTGAGACAGAGACTGGGGTTGGATACCTTGGAAACAAAGGAGCAGGTTCAGGTACTGGAGTCCGCAGTGAGCGATTTAGGTTTGGTGACCGGGTCTTCTGAGTCCGCAGCACTCAGGCTACGTGTGCCTCCGCAGCAGGTGCAGGCCCAGCAGTCCCCAAATCTGAAGACTTCACCATGGATACTCACAGCCCTGGCCCTGCAGACTCTGAGTCTGATCTCCTGCTTGGTATTCTGGACATCCTTGACCCCGAGCTCTTCCTCAAGACAGACCTTCCTGAAGCACAGGAGCCTCAGCAGGAGCTCGTGCTGGTGGGGGGTGCAGGAGAGCAAGTACCTTCCTCCGCACCTGCAGCTTTGGGGCCCGCACCAGTTAAGCTGGAAGCCCTTAATGAACTGATCCACTTCGACCACATCTACACCAAACCCGCAGAGGTGCTGGTGAGCGAGGAGAGCATTTGCGAAGTTAAAGCTGAGGATTCCGTCGCCTTCTCTGAAACCGAGGAAGAAATCCAGGTGGAGGATCAAACGGTTTCTGTCAAGGACGAACCGGAGGAAGTGGTCATCCCTGCGGAGAATCAAACTCCAGACGCGGCTGACGACTTCCTGTCTGACACCTCTTTCGGCGGCTACGAGAAGGCTTCGTATCTGACGGATGCATATAGTGACTCTGGATATGAGAGGTCTCCTTCCCCTTTCAGCAACATTTCATCCCCTCTTTGCTCCGAGGGCTCGTGGGATGACATGTTTGCATCCGAACTCTTCCCCCAACTGATTAGCGTCTGAAAGTTTGCATACGATTGCGAATACCGCTTGCCTTTGCTCCTTTATTGTACGTGATTGCCACGTGCAACATAGTGATAATCTGGCAGAAGCCGCAGCATATAATCCTGCCATTTTTAGACCAAAGGCTTTCTGTTGATAAATTGTGAGTCTGTTTGTGCGCAAGACTTTGTTTGCAACTTTATGTACAGTTCAAACGTGACCCAGTATTTTTGTCGGGGGAAGGGGTTTGGGGATAATCGTTTTAAAAGTAGACCTATTTATTTGTACCTCTCCAGAGTTTTCTGTAATGTAATCTAAGATGCTTATTGTAtaactttaattttattgtaaatgcTCTCCTCAAtcataatgcattaaaaaaatttgcATTGC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response biological_process
GO:0001889 liver development biological_process
GO:0035188 hatching biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko05417 Lipid and atherosclerosis
ko04932 Non-alcoholic fatty liver disease
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-011210-2 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within gland development; hatching; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including axial mesoderm; axis; digestive system; ectoderm; and germ ring. Orthologous to human XBP1 (X-box binding protein 1).

Ensembl:

ensembl_id ENSDART00000051649

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061964 lncRNA downstream 126855 15813775 ~ 15817557 (-) True XLOC_030921
TCONS_00061963 lncRNA downstream 634304 15307539 ~ 15310108 (-) True XLOC_030915
TCONS_00060100 lncRNA downstream 728628 15186823 ~ 15215784 (-) True XLOC_030913
TCONS_00060098 lncRNA downstream 768384 15067796 ~ 15176028 (-) False XLOC_030911
TCONS_00060121 lncRNA upstream 249711 16198544 ~ 16218777 (-) True XLOC_030925
TCONS_00061965 lncRNA upstream 330407 16279240 ~ 16315741 (-) False XLOC_030926
TCONS_00061966 lncRNA upstream 404164 16352997 ~ 16356940 (-) True XLOC_030927
TCONS_00060135 lncRNA upstream 781576 16730409 ~ 16733543 (-) True XLOC_030931
TCONS_00061967 lncRNA upstream 2339977 18288810 ~ 18289576 (-) True XLOC_030939
TCONS_00060113 mRNA downstream 92459 15841523 ~ 15851953 (-) True XLOC_030922
TCONS_00060111 mRNA downstream 252382 15690639 ~ 15692030 (-) True XLOC_030919
TCONS_00060110 mRNA downstream 419630 15523008 ~ 15524782 (-) True XLOC_030918
TCONS_00060107 mRNA downstream 450115 15359995 ~ 15494297 (-) False XLOC_030917
TCONS_00060118 mRNA upstream 179381 16128214 ~ 16139600 (-) True XLOC_030924
TCONS_00060119 mRNA upstream 203111 16151944 ~ 16274058 (-) False XLOC_030925
TCONS_00060120 mRNA upstream 212182 16161015 ~ 16218777 (-) False XLOC_030925
TCONS_00060122 mRNA upstream 366804 16315637 ~ 16351306 (-) True XLOC_030926
TCONS_00060123 mRNA upstream 411376 16360209 ~ 16405651 (-) False XLOC_030928
TCONS_00060112 other downstream 209832 15734525 ~ 15734580 (-) True XLOC_030920
TCONS_00060102 other downstream 720955 15222015 ~ 15223457 (-) False XLOC_030914
TCONS_00060087 other downstream 1571476 14368100 ~ 14372936 (-) True XLOC_030906
TCONS_00060083 other downstream 1699132 14245149 ~ 14245280 (-) True XLOC_030905
TCONS_00060070 other downstream 2411424 13532874 ~ 13532988 (-) True XLOC_030896
TCONS_00060129 other upstream 496516 16445349 ~ 16445465 (-) True XLOC_030930
TCONS_00060137 other upstream 913782 16862615 ~ 16890246 (-) False XLOC_030932
TCONS_00060139 other upstream 950090 16898923 ~ 16899047 (-) True XLOC_030933
TCONS_00060140 other upstream 1091788 17040621 ~ 17041288 (-) True XLOC_030934
TCONS_00060141 other upstream 1651037 17599870 ~ 17602206 (-) False XLOC_030935

Expression Profile

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