RNA id: TCONS_00060122


Basic Information

Item Value
RNA id TCONS_00060122
length 2169
RNA type mRNA
GC content 0.49
exon number 13
gene id XLOC_030926
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 16279240 ~ 16351306 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAATATGAGAATTAAAATGCATCTGTGTACGTTCATTGTGCTGTTTCTTCAGCTTCTATCCTGGACTGCTGCGCGGTCTTGTGCCAGACACTGTGGAGAGAAGTTGAACACATGCTCCTGTCACGCTACATGTGAATCTCTGAAGGACTGCTGTGCTGATTATAGACACTTTTGCCTTGACATTGAGCCTCACTCCGGGTCTTTGCTGGGAGGCACAGACTTTAAAATCCTTAATGCTACATTTGAACCGAACATTACCCTCACTTGCAGGTTCAGCTCAGAGATCTTGACGGAGGGTTATGTGGACGAGAGCGGTGCGGGTCACTGTATTTCTCCTCTGCTCTATGAGTCCGGATGGATCCCGTTTGAAGTGTCCACTGATGGGCTGAATTATGACCGATCGGGGAAGTGGCTCTCAGTTCATCACAGTAAACTGGGTCCTGCCTATAAGATCATTCTGGGTAACGCCACTCAGTGGCAGTATTACGGCACTCCAGGAGTCGGCGGAGATCTGAAGATGACATGGATTTCATCTCTAATAAAAGCAGAGAGAGTCAATGTTGAGCTGTGGGGTTACAGTGAGACTGGAGAGGCATATTCTTCTGACTGGGAGGCGGAGTGGAAATATCTGTACAGTGTAGGCAGAGATGTGCCCAACACTGGCGTTTTCAGTTTCACCCCACAGATCGCAGATAACCCATTCTCCCTCTGGGACCTGGGGAGCATGAGGATCAGTCCCAGCACCAAACCTGACGGGGCCCGAGATGTTAATGCCCTGTGGAGCGAAGAACATGCAGTCGCCTGGCATCTAGAAGAGGCCTTCAGGAAAGACTCTGCAGGCTGGGCTCTAAAGAAGTGTCTTCTTTGGGATAAAGAAGAGAAATCAATGCCCGACTTCTTAACAGAGATCACCGACTGCCCCTGCACACTGGCCCAGGCCCGCGCTGACACTGGGAGATTTCATACTGATTATGGCTGTGATATTGAGGCTGGAAGTCTCTGTGTTTACCATCCAGGTGCAGTTCACTGCGTCAGAGCCATTCAGGGCAGTCCTGAATATGGAGCAGGTCAGCAGTGTTGTTACGACAGCACTGGAGCTCAGGTGCTCACGAGGGACTCTATTGGTGGCAGTACTCCTGATCGAGGGCATGACTGGGGGGATCCACCATACAAGAAACCCCCCAGAGTTCCTGGATTCTCCCACTGGAAGTACGATGTGATTAGCTTCTACTACTGCTGCCTGTGGTCACACAACTGTGAATACTACTTCACTCACCGGCCGTCCAGTGACTGCAGGACATATCAACCTCCTAGAGCAGCTGCTGTCCTTGGTGACCCACACTTCATCACATTTGATGGTGTTACTTTCACCTTCAATGGAAAAGGTGAATACACTCTGGTTCACTCTCCAGCTTTTCAGCTGTCAGTGCAAGGCAGGACTGAACCAATGAGATTTGAGAATGGTGAGTTTCAAATGGTGagggacattttaaaaaaaatagaccGAATCAGACTTATTACAGtcacacaaaATTGCAACtataacatttcttttaaaaatGTCAGGCTGgacttttttttcctcaaaatcttgtttttgttttgtccagGGGCCATCACCAATGAGACTTCACTGTTCACTTACGACACAAACCACCTtctgaatgaatattattatgctCCAAAGCACGATCCATCGTTCATCCCAAACTTCTCCATGACCGAAGACCCTGAGGATCCTCTTGTGGAGGCGACGCTGAGGCTGTGTTCAGGAGACGGGGCTGACTTCTGCAAATATGACGCCCTGAGCATGAGGAGTCTGAAGCAAGGCAACGCCACACTGAGGGCCTACAGGagccacacagacacacagactgcACTGGAACCTGTTCAGTCCTGCGGTTGGTTGTCTCCACCAAACCACGGTCAGAAAGAAGGAACCCTGTACCTGGAGGGGGCGACGGTCTCATTTTCATGCAACAGAGGATATGGTCTCTTTGGGTCTCAGAATCGCACCTGTCAAGCAGACGGGACGTGGTCTGGACAGGACACTCACTGTGTGGCTGaAAACACGCTGGCCATCGTCTTGGGGAGTGTGGGTGCTGTGCTGGCGTTGGTTGTCATGGTTATAGCGATCATTGTATACTCAAAGAAGCAGAAAAAGTGa

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006935 chemotaxis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0009060 aerobic respiration biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0097485 neuron projection guidance biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0071711 basement membrane organization biological_process
GO:0061564 axon development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0042330 taxis biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0070069 cytochrome complex cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-080225-20 Is expressed in myotome; pancreas; and pancreatic bud.

Ensembl:

ensembl_id ENSDART00000168643

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060121 lncRNA downstream 96860 16198544 ~ 16218777 (-) True XLOC_030925
TCONS_00060117 lncRNA downstream 366769 15946218 ~ 15948868 (-) True XLOC_030923
TCONS_00061964 lncRNA downstream 498080 15813775 ~ 15817557 (-) True XLOC_030921
TCONS_00061963 lncRNA downstream 1005529 15307539 ~ 15310108 (-) True XLOC_030915
TCONS_00060100 lncRNA downstream 1099853 15186823 ~ 15215784 (-) True XLOC_030913
TCONS_00061966 lncRNA upstream 1691 16352997 ~ 16356940 (-) True XLOC_030927
TCONS_00060135 lncRNA upstream 379103 16730409 ~ 16733543 (-) True XLOC_030931
TCONS_00061967 lncRNA upstream 1937504 18288810 ~ 18289576 (-) True XLOC_030939
TCONS_00061968 lncRNA upstream 1966597 18317903 ~ 18424637 (-) False XLOC_030940
TCONS_00061969 lncRNA upstream 2056075 18407381 ~ 18424637 (-) False XLOC_030940
TCONS_00060119 mRNA downstream 41579 16151944 ~ 16274058 (-) False XLOC_030925
TCONS_00060120 mRNA downstream 96860 16161015 ~ 16218777 (-) False XLOC_030925
TCONS_00060118 mRNA downstream 176037 16128214 ~ 16139600 (-) True XLOC_030924
TCONS_00060115 mRNA downstream 366717 15944411 ~ 15948920 (-) False XLOC_030923
TCONS_00060116 mRNA downstream 366804 15944412 ~ 15948833 (-) False XLOC_030923
TCONS_00060123 mRNA upstream 8903 16360209 ~ 16405651 (-) False XLOC_030928
TCONS_00060125 mRNA upstream 9526 16360832 ~ 16425781 (-) False XLOC_030928
TCONS_00060124 mRNA upstream 9526 16360832 ~ 16425781 (-) True XLOC_030928
TCONS_00060126 mRNA upstream 77105 16428411 ~ 16475682 (-) False XLOC_030929
TCONS_00060127 mRNA upstream 80540 16431846 ~ 16472719 (-) False XLOC_030929
TCONS_00060114 other downstream 366804 15944411 ~ 15948833 (-) False XLOC_030923
TCONS_00060112 other downstream 581057 15734525 ~ 15734580 (-) True XLOC_030920
TCONS_00060102 other downstream 1092180 15222015 ~ 15223457 (-) False XLOC_030914
TCONS_00060087 other downstream 1942701 14368100 ~ 14372936 (-) True XLOC_030906
TCONS_00060083 other downstream 2070357 14245149 ~ 14245280 (-) True XLOC_030905
TCONS_00060129 other upstream 94043 16445349 ~ 16445465 (-) True XLOC_030930
TCONS_00060137 other upstream 511309 16862615 ~ 16890246 (-) False XLOC_030932
TCONS_00060139 other upstream 547617 16898923 ~ 16899047 (-) True XLOC_030933
TCONS_00060140 other upstream 689315 17040621 ~ 17041288 (-) True XLOC_030934
TCONS_00060141 other upstream 1248564 17599870 ~ 17602206 (-) False XLOC_030935

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000071_02838185_02847470.mRNA True 2581 mRNA 0.49 13 CI01000071 2838148 ~ 2847611 (+)