RNA id: TCONS_00062201


Basic Information

Item Value
RNA id TCONS_00062201
length 1770
RNA type mRNA
GC content 0.56
exon number 2
gene id XLOC_031738
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 202367 ~ 205291 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAAATGAGACGTCACAGGGTTTTCTTGATTTGCACGGTGGGACTGTGTGTCATTTCCTTCCTGCATTACTACAAGGCTCTGCACTATGTGTCCCTGCTGAGGGAGCTGTCTGCACCCTACCCCAACATCAAGTCCTTCATCATGGTCACCGGGTTCTTCTGGAAGGAGGGCAGCACCATGTCCAGTGCGACTCCAGAGGAAGCGCCGCCGGATGGGAAGTTGCAGGCCGCAGGAGGCCTGGAGCTGGATCTGGATACGGGACAGGAGCCTGAAGCACCACAGCCTTGGAGGAGACCTGAAGAAGTGCAGCGCAGGAGCTCCAGCACCACCGAGGTTCATAAGGTGGGTTTGGTCCCCTGGAAGCCCAGCAGCCCGACCGACCCAAAAGCCGACCCTCAGAGAGAGTCTGAAGTGAGATCCGCCATAAACAAACTCCAGCCGCGCCACGTTTCGACTCCGGACCCACTGGAAACTCTTGGCGATCTGCACAGGCGCTCACACCTGCTCCAGGACGACCGCAGCCCGTACTTCGTGCGCACTAAAGCGGGCGCGCTGTGCTTCCGGCAGGGCACAGAAGTGGCGCCACCCAAAGACGAAACGCTAAAAGTGAAACCCAGCGCCGCAGGAGTGATCCAGCGGAGAATACTGCAGAAACCCGACGAGTCCAAGACTTCGGGAAAATCAGTGGAGGAATCCAGACTCTCTCGGGGGAAGCCAAAACGCGGAAAGAGACTAGTAAAGTGTGTTTGTCGTGCGGGATGGCACGGCCCGTACTGCGGTGTACCCACAATGGTGTACCACTCCAATCTGCCAACCAAGGAGAGGCTGATGCCTCGTGAAACTCCTCGGCGTGTAATTAACGCCATTAACGTAAACCACGAGTTCGACCTGCTGCACGTGCGCTTTCGGGAGCTCCTGCAGGCGGTCGATGTGTTTCTGGTATGTGAGTCTAACTTTACGGCGTACGGTGAGAGGCGTCCGCTCAGGTTCCTCAATCTGCTGCTCAACGGGACGTACGATTACGTGCGGCACAAGATCCTCTACGTCTTCCTGGATCATTTCCCAGACGGCGGCCGACAGGACGGGTGGATTGCAGATGATTACCTGCGCACCTTCCTGACCCGAAACGGGATATCTCGGGTTGCAGGAATGCGTCCGGATGATGTCTTTCTCATCAACGATGCTGATGAAATCCCGGCTCAAGAAGGAATTCTGTTCCTTAAGCTGTTCGACGGCTGGACGGAGCCTTTCGCTATTCACATGCGTAAATCTCTGTATGGGTTTTTCTGGAAGCAGCTGGGCTCGCTGGAGGTGGTGTCCGGGTGCACCGTCGGGATGTTGAGGGACGTCTATGATAACGATGGGATTCGGCTGCGGAGACGGGAATATTACACCATGCCGGGATTTCGGAAGTACGAGAATGACACTGGACACATCCTGGTGCAGTGGTCCATCGGGAGCCCGTTTCATTTCGCAGGCTGGCACTGCTCCTGGTGTTTCACACCAGAGGGAATTCACTTCAAACTCATTTCAGCCCAAAACGGCGACTTTCCTCGCTGGGGCGATTACGAGGACAAGCGAGACCTCAACTACATCCGGGAGCTGATCCGCACCGGCGGCTGGTTCGACGGCTCTGTGCAGGAGTACCCACCCTCGGACCCTAAGGAGCACATGTACGCCCCCAAATACATGTTGGAGCATTATGATCTCTACCGATACCTGTTGGAGAACCCGTACGCCAAACAGTTTAAACCAGGAGGCGCGTAG

Function

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process
GO:0016020 membrane cellular_component
GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130820-2 Predicted to enable beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity. Predicted to act upstream of or within protein N-linked glycosylation. Predicted to be located in membrane. Orthologous to human MGAT3 (beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase).

Ensembl:

ensembl_id ENSDART00000168232

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064768 lncRNA downstream 240342 445633 ~ 453037 (+) False XLOC_031744
TCONS_00064767 lncRNA downstream 240342 445633 ~ 453037 (+) True XLOC_031744
TCONS_00062212 lncRNA downstream 389009 594300 ~ 597161 (+) True XLOC_031747
TCONS_00064769 lncRNA downstream 753966 959257 ~ 960829 (+) True XLOC_031750
TCONS_00064770 lncRNA downstream 858647 1063938 ~ 1065154 (+) False XLOC_031751
TCONS_00062200 mRNA upstream 17070 181142 ~ 185297 (+) True XLOC_031737
TCONS_00062199 mRNA upstream 29375 168962 ~ 172992 (+) True XLOC_031736
TCONS_00062198 mRNA upstream 43753 154556 ~ 158614 (+) True XLOC_031735
TCONS_00062197 mRNA upstream 44979 153146 ~ 157388 (+) False XLOC_031735
TCONS_00062196 mRNA upstream 49412 149405 ~ 152955 (+) True XLOC_031734
TCONS_00062202 mRNA downstream 59636 264927 ~ 268818 (+) True XLOC_031739
TCONS_00062203 mRNA downstream 63913 269204 ~ 272554 (+) True XLOC_031740
TCONS_00062204 mRNA downstream 90839 296130 ~ 342216 (+) True XLOC_031741
TCONS_00062205 mRNA downstream 164700 369991 ~ 374974 (+) False XLOC_031742
TCONS_00062206 mRNA downstream 169584 374875 ~ 375101 (+) True XLOC_031742
TCONS_00062191 other upstream 97645 103361 ~ 104722 (+) False XLOC_031731
TCONS_00062246 other downstream 2960317 3165608 ~ 3165722 (+) True XLOC_031773
TCONS_00062248 other downstream 3013072 3218363 ~ 3249470 (+) True XLOC_031772
TCONS_00062273 other downstream 3622486 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062276 other downstream 3629151 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062297 other downstream 5478890 5684181 ~ 5684295 (+) True XLOC_031803

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000023_00158550_00162357.mRNA True 4005 mRNA 0.49 2 CI01000023 157310 ~ 163340 (+)
bowfin (Amia calva) AMCG00014883 True 1755 mRNA 0.66 2 CM030128.1 38261530 ~ 38263484 (-)