RNA id: TCONS_00064261


Basic Information

Item Value
RNA id TCONS_00064261
length 812
RNA type processed_transcript
GC content 0.43
exon number 4
gene id XLOC_033067
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40743367 ~ 40778294 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGGCGACTCTGCGTCCGTACCTGAATGCGGTGCGTGCTACACTGCAGGCAGCTCTCTGTCTGGAGAACTTCTCCTCACAGGTGGTGGAAAGACACAACAAACCTGAGGTTGAAGTCCGGCTGATGAGATCGAAAAGATCCTGTGTCACAAGTTTATGCGCTTCATGATGATGAGAGCCGAGAACTTCTTCATCCTTAGGAGAAAACCTGTGGAGGGATATGACATCAGTTTCCTCATTACCAACTTCCACACAGAACAAATGTACAAGCATAAGTTAGTGGACTTTGTCATCCATTTCATGGAGGAGATCGACAAGGAAATCAGTGAGATGAAACTGTCAGTCAACGCCAGGGCTCGCATAGTTGCAGAGGAGTTCCTCAAAAACTTTTAAGAAACGATCAGCACACCTTCTGCTGGCTGCAATACCCTATCACCGTAAAACACCTACGGAGAGCTTTGGGGCCATTGGGGAAGGAGCTAAGGTGTGTTTGATTCCTGGACCATCACCACAGCTGGATCCAGAAGGGTCACAGGAATGATTTCAGAGTATTGCATTATTGTAACTTGAGAGCAAAGTGACGGATTTAACAGACAGGCACGGTACTCCATTTGTTGTCTGTTCTActccttttttttttgccctgTTTTTTTAACTTTTGCTAATTgcctaatttttttaaagtatttgtttCTTCACATTCAGCAAATTTCTTTGCATTCCGTCTCTTTTCATCTTATCCCACATACCTTCGTTATTAtgcagtagtagcagtagtaaagTGCTTACAACTTTGCAATATTCTGAATATG

Function

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0030041 actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005885 Arp2/3 protein complex cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04138 Autophagy - yeast
ko04530 Tight junction
ko04810 Regulation of actin cytoskeleton
ko04666 Fc gamma R-mediated phagocytosis
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection
ko05131 Shigellosis
ko05135 Yersinia infection
ko05100 Bacterial invasion of epithelial cells
ko04131 Membrane trafficking
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-010724-9 Predicted to enable actin binding activity. Predicted to act upstream of or within Arp2/3 complex-mediated actin nucleation and actin filament polymerization. Predicted to be located in actin cytoskeleton; cell projection; and cytoplasm. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC4 (actin related protein 2/3 complex subunit 4).

Ensembl:

ensembl_id ENSDART00000143889

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065212 lncRNA downstream 101433 40659954 ~ 40661324 (-) True XLOC_033061
TCONS_00065211 lncRNA downstream 103657 40654032 ~ 40659100 (-) False XLOC_033057
TCONS_00065210 lncRNA downstream 133596 40625631 ~ 40629161 (-) True XLOC_033056
TCONS_00065209 lncRNA downstream 133635 40625631 ~ 40629122 (-) False XLOC_033056
TCONS_00064236 lncRNA downstream 189525 40572675 ~ 40573232 (-) False XLOC_033053
TCONS_00065213 lncRNA upstream 88468 40856139 ~ 40863887 (-) False XLOC_033074
TCONS_00065214 lncRNA upstream 88468 40856139 ~ 40864078 (-) False XLOC_033074
TCONS_00065215 lncRNA upstream 92625 40860296 ~ 40863721 (-) True XLOC_033074
TCONS_00065216 lncRNA upstream 196015 40963686 ~ 40968341 (-) True XLOC_033077
TCONS_00064283 lncRNA upstream 258557 41026228 ~ 41028618 (-) True XLOC_033080
TCONS_00064258 mRNA downstream 6619 40745667 ~ 40756138 (-) True XLOC_033068
TCONS_00064257 mRNA downstream 6848 40745437 ~ 40755909 (-) False XLOC_033068
TCONS_00064254 mRNA downstream 18031 40730869 ~ 40744726 (-) False XLOC_033066
TCONS_00064255 mRNA downstream 18037 40734100 ~ 40744720 (-) True XLOC_033066
TCONS_00064252 mRNA downstream 40277 40715637 ~ 40722480 (-) False XLOC_033065
TCONS_00064262 mRNA upstream 1846 40769517 ~ 40771813 (-) True XLOC_033069
TCONS_00064264 mRNA upstream 54916 40822587 ~ 40832245 (-) True XLOC_033071
TCONS_00064265 mRNA upstream 73485 40841156 ~ 40842768 (-) True XLOC_033072
TCONS_00064266 mRNA upstream 76115 40843786 ~ 40854458 (-) False XLOC_033073
TCONS_00064267 mRNA upstream 76288 40843959 ~ 40851499 (-) True XLOC_033073
TCONS_00064247 other downstream 95294 40667347 ~ 40667463 (-) True XLOC_033062
TCONS_00064244 other downstream 105085 40654729 ~ 40657672 (-) True XLOC_033057
TCONS_00064246 other downstream 106469 40656204 ~ 40656288 (-) True XLOC_033060
TCONS_00064245 other downstream 106672 40656003 ~ 40656085 (-) True XLOC_033059
TCONS_00064243 other downstream 109519 40653129 ~ 40653238 (-) True XLOC_033058
TCONS_00064263 other upstream 28227 40795898 ~ 40819766 (-) True XLOC_033070
TCONS_00064277 other upstream 178686 40946357 ~ 40946475 (-) True XLOC_033076
TCONS_00064287 other upstream 312626 41080297 ~ 41085447 (-) False XLOC_033082
TCONS_00064312 other upstream 1641786 42409457 ~ 42418108 (-) False XLOC_033096
TCONS_00064313 other upstream 1642553 42410224 ~ 42415662 (-) False XLOC_033096

Expression Profile

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